MNE-BIDS

MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis - Published in JOSS (2019)

https://github.com/mne-tools/mne-bids

Science Score: 100.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
✓
DOI references
Found 14 DOI reference(s) in README and JOSS metadata
✓
Academic publication links
Links to: joss.theoj.org
✓
Committers with academic emails
2 of 59 committers (3.4%) from academic institutions
○
Institutional organization owner
✓
JOSS paper metadata
Published in Journal of Open Source Software

Keywords

bids eeg electroencephalography ieeg magnetoencephalography meg mne neuroimaging neuroscience

Keywords from Contributors

ecog electrocorticography brain connectivity ica time-frequency seeg fieldtrip donders dipole

Scientific Fields

Medicine Life Sciences - 88% confidence

Mathematics Computer Science - 84% confidence

Last synced: 4 months ago · JSON representation ·

Repository

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Basic Info

Host: GitHub
Owner: mne-tools
License: bsd-3-clause
Language: Python
Default Branch: main
Homepage: https://mne.tools/mne-bids/
Size: 68.1 MB

Statistics

Stars: 149
Watchers: 18
Forks: 93
Open Issues: 90
Releases: 18

Topics

bids eeg electroencephalography ieeg magnetoencephalography meg mne neuroimaging neuroscience

Created over 8 years ago · Last pushed 4 months ago

Metadata Files

Readme Contributing License Citation

MNE-BIDS

MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

Schematic: From raw data to BIDS using MNE-BIDS

Why?

MNE-BIDS links BIDS and MNE-Python with the goal to make your analyses faster to code and more robust, and to facilitate data and code sharing with co-workers and collaborators.

Having your data in BIDS format also allows the use of automated pipelines, for example mne-bids-pipeline.

How?

The documentation can be found under the following links:

for the stable release
for the latest (development) version

Getting Help

For any usage questions, please post to the MNE Forum. Be sure to add the mne-bids tag to your question.

Citing

If you use MNE-BIDS in your work, please cite our publication in JOSS:

Appelhoff, S., Sanderson, M., Brooks, T., Vliet, M., Quentin, R., Holdgraf, C., Chaumon, M., Mikulan, E., Tavabi, K., Höchenberger, R., Welke, D., Brunner, C., Rockhill, A., Larson, E., Gramfort, A., & Jas, M. (2019): MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis. Journal of Open Source Software, 4:1896. DOI: 10.21105/joss.01896

Please also cite one of the following papers to credit BIDS, depending on which data type you used:

Owner

Name: MNE tools for MEG and EEG data analysis
Login: mne-tools
Kind: organization

Website: http://mne.tools
Repositories: 45
Profile: https://github.com/mne-tools

JOSS Publication

MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis

Published

December 18, 2019

DOI

10.21105/joss.01896

Volume 4, Issue 44, Page 1896

Authors

Stefan Appelhoff

Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany

Matthew Sanderson

Department of Cognitive Sciences, Macquarie University, Sydney, Australia

Teon L. Brooks

Mozilla

Marijn van Vliet

Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland

Romain Quentin

Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892

Chris Holdgraf

UC Berkeley, Project Jupyter

Maximilien Chaumon

Institut du cerveau et de la moelle épinière (ICM), Paris, France

Ezequiel Mikulan

Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy

Kambiz Tavabi

Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA

Richard Höchenberger

Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany

Dominik Welke

Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany

Clemens Brunner

Institute of Psychology, University of Graz, Austria

Alexander P. Rockhill

University of Oregon, Eugene OR, USA

Eric Larson

Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA

Alexandre Gramfort

Université Paris-Saclay, Inria, CEA, Palaiseau, France

Mainak Jas

Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA

Editor

Ariel Rokem

Citation (CITATION.cff)

# YAML 1.2
---
# Metadata for citation of this software according to the CFF format (https://citation-file-format.github.io/)
cff-version: 1.2.0
title: 'MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis'
abstract: 'MNE-BIDS is a Python library to facilitate the analysis of MEG, EEG, and iEEG data with MNE-Python for data conforming to the BIDS (Brain Imaging Data Structure) format. More information about BIDS and MNE-Python can be found at <a href="https://bids.neuroimaging.io">bids.neuroimaging.io</a> and <a href="https://mne.tools">mne.tools</a>, respectively.'
authors:
    - given-names: Stefan
      family-names: Appelhoff
      affiliation: 'Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany'
      orcid: 'https://orcid.org/0000-0001-8002-0877'
    - given-names: Matthew
      family-names: Sanderson
      affiliation: 'Department of Cognitive Sciences, Macquarie University, Sydney, Australia'
      orcid: 'https://orcid.org/0000-0002-4645-8979'
    - given-names: Teon L.
      family-names: Brooks
      affiliation: 'Mozilla'
      orcid: 'https://orcid.org/0000-0001-7344-3230'
    - given-names: Marijn
      family-names: van Vliet
      affiliation: 'Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland'
      orcid: 'https://orcid.org/0000-0002-6537-6899'
    - given-names: Romain
      family-names: Quentin
      affiliation: 'Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892'
      orcid: 'https://orcid.org/0000-0001-7659-3605'
    - given-names: Chris
      family-names: Holdgraf
      affiliation: 'UC Berkeley, Project Jupyter'
      orcid: 'https://orcid.org/0000-0002-2391-0678'
    - given-names: Maximilien
      family-names: Chaumon
      affiliation: 'Institut du cerveau et de la moelle épinière (ICM), Paris, France'
      orcid: 'https://orcid.org/0000-0001-9664-8861'
    - given-names: Ezequiel
      family-names: Mikulan
      affiliation: "Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy"
      orcid: 'https://orcid.org/0000-0001-7259-6120'
    - given-names: Kambiz
      family-names: Tavabi
      affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
      orcid: 'https://orcid.org/0000-0003-1881-892X'
    - given-names: Richard
      family-names: Höchenberger
      affiliation: 'Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany'
      orcid: 'https://orcid.org/0000-0002-0380-4798'
    - given-names: Dominik
      family-names: Welke
      affiliation: 'Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany'
      orcid: 'https://orcid.org/0000-0002-5529-1998'
    - given-names: Clemens
      family-names: Brunner
      affiliation: 'Institute of Psychology, University of Graz, Austria'
      orcid: 'https://orcid.org/0000-0002-6030-2233'
    - given-names: Alexander P.
      family-names: Rockhill
      affiliation: 'University of Oregon, Eugene OR, USA'
      orcid: 'https://orcid.org/0000-0003-3868-7453'
    - given-names: Eric
      family-names: Larson
      affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
      orcid: 'https://orcid.org/0000-0003-4782-5360'
    - given-names: Adam
      family-names: Li
      affiliation: 'Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA'
      orcid: 'https://orcid.org/0000-0001-8421-365X'
    - given-names: Ariel
      family-names: Rokem
      affiliation: 'Department of Psychology, University of Washington, Seattle WA, USA'
      orcid: 'https://orcid.org/0000-0003-0679-1985'
    - given-names: Daniel
      family-names: McCloy
      affiliation: 'Institute for Learning & Brain Sciences, University of Washington, Seattle WA, USA'
      orcid: 'https://orcid.org/0000-0002-7572-3241'
    - given-names: Austin J.
      family-names: Hurst
      affiliation: 'Dalhousie University, Halifax, Nova Scotia'
      orcid: 'https://orcid.org/0000-0002-0219-4131'
    - given-names: Diego
      family-names: Lozano-Soldevilla
      affiliation: "Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain"
      orcid: 'https://orcid.org/0000-0003-1794-8204'
    - given-names: Eduard
      family-names: Ort
      affiliation: 'Institute of Experimental Psychology, Heinrich Heine University Düsseldorf, Germany'
      orcid: 'https://orcid.org/0000-0001-5546-3561'
    - given-names: Ethan
      family-names: Knights
      affiliation: 'Medical Research Council Cognition & Brain Sciences Unit, University of Cambridge'
      orcid: 'https://orcid.org/0000-0001-6078-9160'
    - given-names: Evgenii
      family-names: Kalenkovich
      affiliation: 'HSE University, Centre for Cognition and Decision Making, Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Russian Federation'
      orcid: 'https://orcid.org/0000-0002-4606-4179'
    - given-names: Franziska
      family-names: von Albedyll
    - given-names: Fu-Te
      family-names: Wong
    - given-names: Jean-Rémi
      family-names: King
      affiliation: 'Facebook AI Research, Paris, France'
      orcid: 'https://orcid.org/0000-0002-2121-170X'
    - given-names: Julia Guiomar
      family-names: Niso Galán
      affiliation: 'Psychological & Brain Sciences, Indiana University, Bloomington, IN, USA'
      orcid: 'https://orcid.org/0000-0001-5872-8924'
    - given-names: Richard M.
      family-names: Köhler
      orcid: 'https://orcid.org/0000-0002-5219-1289'
      affiliation: 'Movement Disorder and Neuromodulation Unit, Department of Neurology, Charité – Universitätsmedizin Berlin, Germany'
    - given-names: Robert
      family-names: Luke
      orcid: 'https://orcid.org/0000-0002-4930-8351'
    - given-names: Simon
      family-names: Kern
      affiliation: 'Central Institute of Mental Health, Mannheim, Germany'
      orcid: 'https://orcid.org/0000-0002-9050-9040'
    - given-names: Sin
      family-names: Kim
      affiliation: 'Korea Advanced Institute of Science and Technology'
      orcid: 'https://orcid.org/0000-0003-4652-3758'
    - given-names: Sophie
      family-names: Herbst
      affiliation: 'NeuroSpin, CEA, DRF/Joliot, INSERM, Cognitive Neuroimaging Unit, Université Paris-Saclay, 91191Gif/Yvette, France'
      orcid: 'https://orcid.org/0000-0001-8502-0366'
    - given-names: Swastika
      family-names: Gupta
    - given-names: Thomas
      family-names: Donoghue
      affiliation: 'Department of Biomedical Engineering, Columbia University'
      orcid: 'https://orcid.org/0000-0001-5911-0472'
    - given-names: Yorguin José
      family-names: Mantilla Ramos
      affiliation: 'Grupo Neuropsicología y Conducta, Universidad de Antioquia, Medellín, Colombia'
      orcid: 'https://orcid.org/0000-0003-4473-0876'
    - given-names: Scott
      family-names: Huberty
      affiliation: 'McGill University, Montréal, QC, Canada'
      orcid: 'https://orcid.org/0000-0003-2637-031X'
    - given-names: Mathieu
      family-names: Scheltienne
      affiliation: 'Human Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland'
      orcid: 'https://orcid.org/0000-0001-8316-7436'
    - given-names: Anand
      family-names: Saini
    - given-names: Bruno
      family-names: Hebling Vieira
      affiliation: 'Methods of Plasticity Research, Department of Psychology, University of Zurich, Zurich, Switzerland'
      orcid: 'https://orcid.org/0000-0002-8770-7396'
    - given-names: Denis
      family-names: Engemann
      affiliation: 'Roche Pharma Research and Early Development (pRED), Basel, Switzerland'
      orcid: 'https://orcid.org/0000-0002-7223-1014'
    - given-names: Moritz
      family-names: Gerster
      affiliation: 'Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany'
      orcid: 'https://orcid.org/0000-0001-9343-6986'
    - given-names: Fesselier
      family-names: Laetitia
      affiliation: 'McGill Centre for Integrative Neuroscience, McGill University, Montreal, Canada'
    - given-names: Jonathan
      family-names: Vanhoecke
      orcid: 'https://orcid.org/0000-0002-9857-1519'
      affiliation: 'Movement Disorder and Neuromodulation Unit, Department of Neurology, Charité – Universitätsmedizin Berlin, Germany'
    - given-names: Ford
      family-names: McDonald
      affiliation: 'Behavior and NeuroData Core, Brown University, Providence, RI, USA'
      orcid: 'https://orcid.org/0009-0004-5099-7109'
    - given-names: Pierre
      family-names: Guetschel
      orcid: 'https://orcid.org/0000-0002-8933-7640'
      affiliation: 'Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands'
    - given-names: Mara
      family-names: Wolter
      orcid: 'https://orcid.org/0000-0002-6785-9886'
      affiliation: 'Centre for Integrative Neuroscience, Tübingen, Germany'
    - given-names: Julius
      family-names: Welzel
      affiliation: 'Department of Neurology, Kiel University, Germany'
      orcid: 'https://orcid.org/0000-0003-4782-5360'
    - given-names: Kaare
      family-names: Mikkelsen
      affiliation: 'Department of Electrical and Computer Engineering, Aarhus University, Denmark'
      orcid: 'https://orcid.org/0000-0002-7360-8629'
    - given-names: Amaia
      family-names: Benitez
      affiliation: 'Magnetoencephalography Core, National Institutes of Health, Bethesda, Maryland, USA'
      orcid: 'https://orcid.org/0000-0001-6364-7272'
    - given-names: Thomas
      family-names: Hartmann
      affiliation: 'Paris-Lodron-University Salzburg, Centre for Cognitive Neuroscience, Department of Psychology, Salzburg, Austria'
      orcid: 'https://orcid.org/0000-0002-8298-8125'
    - given-names: Aaron
      family-names: Earle-Richardson
      affiliation: 'Duke University School of Medicine, Department of Neurology'
    - given-names: William
      family-names: Turner
      affiliation: 'Wu Tsai Neurosciences Institute, Stanford University'
      orcid: 'https://orcid.org/0000-0001-8639-9769'
    - given-names: Christian
      family-names: O'Reilly
      affiliation: 'Computer Science and Engineering, University of South Carolina'
      orcid: 'https://orcid.org/0000-0002-3149-4934'
    - given-names: Berk
      family-names: Gerçek
      affiliation: 'University of Geneva, Department of Fundamental Neuroscience'
      orcid: 'https://orcid.org/0000-0003-1063-6769'
    - given-names: Matthias
      family-names: Dold
      affiliation: 'Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, Netherlands'
      orcid: 'https://orcid.org/0009-0003-1477-4912'
    - given-names: Harrison
      family-names: Ritz
      affiliation: 'Princeton Neuroscience Institute, Princeton University, Princeton, USA'
      orcid: 'https://orcid.org/0009-0003-1477-4912'
    - given-names: Alexandre
      family-names: Gramfort
      affiliation: 'Université Paris-Saclay, Inria, CEA, Palaiseau, France'
      orcid: 'https://orcid.org/0000-0001-9791-4404'
    - given-names: Mainak
      family-names: Jas
      affiliation: 'Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA'
      orcid: 'https://orcid.org/0000-0002-3199-9027'
type: software
repository-code: 'https://github.com/mne-tools/mne-bids'
license: BSD-3-Clause
keywords:
  - BIDS
  - brain imaging data structure
  - neuroscience
  - neuroimaging
  - mne
  - python
  - magnetoencephalography
  - meg
  - electroencephalography
  - eeg
  - ieeg
message: >-
  Please cite this software using the metadata from
  'preferred-citation' in the CITATION.cff file.
preferred-citation:
  title: >-
    MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
  journal: Journal of Open Source Software
  type: article
  year: 2019
  volume: 4
  issue: 44
  start: 1896
  doi: 10.21105/joss.01896
  authors:
    - given-names: Stefan
      family-names: Appelhoff
      affiliation: 'Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany'
      orcid: 'https://orcid.org/0000-0001-8002-0877'
    - given-names: Matthew
      family-names: Sanderson
      affiliation: 'Department of Cognitive Sciences, Macquarie University, Sydney, Australia'
      orcid: 'https://orcid.org/0000-0002-4645-8979'
    - given-names: Teon L.
      family-names: Brooks
      affiliation: 'Mozilla'
      orcid: 'https://orcid.org/0000-0001-7344-3230'
    - given-names: Marijn
      family-names: van Vliet
      affiliation: 'Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland'
      orcid: 'https://orcid.org/0000-0002-6537-6899'
    - given-names: Romain
      family-names: Quentin
      affiliation: 'Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892'
      orcid: 'https://orcid.org/0000-0001-7659-3605'
    - given-names: Chris
      family-names: Holdgraf
      affiliation: 'UC Berkeley, Project Jupyter'
      orcid: 'https://orcid.org/0000-0002-2391-0678'
    - given-names: Maximilien
      family-names: Chaumon
      affiliation: 'Institut du cerveau et de la moelle épinière (ICM), Paris, France'
      orcid: 'https://orcid.org/0000-0001-9664-8861'
    - given-names: Ezequiel
      family-names: Mikulan
      affiliation: "Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy"
      orcid: 'https://orcid.org/0000-0001-7259-6120'
    - given-names: Kambiz
      family-names: Tavabi
      affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
      orcid: 'https://orcid.org/0000-0003-1881-892X'
    - given-names: Richard
      family-names: Höchenberger
      affiliation: 'Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany'
      orcid: 'https://orcid.org/0000-0002-0380-4798'
    - given-names: Dominik
      family-names: Welke
      affiliation: 'Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany'
      orcid: 'https://orcid.org/0000-0002-5529-1998'
    - given-names: Clemens
      family-names: Brunner
      affiliation: 'Institute of Psychology, University of Graz, Austria'
      orcid: 'https://orcid.org/0000-0002-6030-2233'
    - given-names: Alexander P.
      family-names: Rockhill
      affiliation: 'University of Oregon, Eugene OR, USA'
      orcid: 'https://orcid.org/0000-0003-3868-7453'
    - given-names: Eric
      family-names: Larson
      affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
      orcid: 'https://orcid.org/0000-0003-4782-5360'
    - given-names: Alexandre
      family-names: Gramfort
      affiliation: 'Université Paris-Saclay, Inria, CEA, Palaiseau, France'
      orcid: 'https://orcid.org/0000-0001-9791-4404'
    - given-names: Mainak
      family-names: Jas
      affiliation: 'Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA'
      orcid: 'https://orcid.org/0000-0002-3199-9027'
identifiers:
  - description: "Code archive on Zenodo"
    type: doi
    value: 10.5281/zenodo.3580272
...

GitHub Events

Total

Create event: 36
Release event: 1
Issues event: 49
Watch event: 15
Delete event: 31
Issue comment event: 276
Push event: 135
Gollum event: 1
Pull request event: 127
Pull request review event: 67
Pull request review comment event: 56
Fork event: 10

Last Year

Create event: 36
Release event: 1
Issues event: 49
Watch event: 15
Delete event: 31
Issue comment event: 276
Push event: 135
Gollum event: 1
Pull request event: 127
Pull request review event: 67
Pull request review comment event: 56
Fork event: 10

Committers

Last synced: 5 months ago

All Time

Total Commits: 1,510
Total Committers: 59
Avg Commits per committer: 25.593
Development Distribution Score (DDS): 0.665

Past Year

Commits: 103
Committers: 19
Avg Commits per committer: 5.421
Development Distribution Score (DDS): 0.602

Top Committers

Name	Email	Commits
Stefan Appelhoff	s**f@m**g	506
Richard Höchenberger	r**r@g**m	175
Mainak Jas	m**s@g**m	146
Adam Li	a**2@g**m	102
Matt Sanderson	m**2@y**u	97
Alex Rockhill	a**6@g**m	71
pre-commit-ci[bot]	6****]	70
Alexandre Gramfort	a**t@m**g	65
Teon Brooks	t**s@g**m	58
Eric Larson	l**d@g**m	28
Marijn van Vliet	w**t@g**m	20
Romain Quentin	r**n@g**m	18
Daniel McCloy	d**n@m**o	14
dependabot[bot]	4****]	11
Maximilien Chaumon	m**n@g**m	11
Dominik Welke	d**e@a**e	11
Chris Holdgraf	c**f@g**m	11
Evgenii Kalenkovich	e**h@g**m	10
Austin Hurst	m**t@g**m	8
Ezequiel Mikulan	e**n@g**m	6
Scott Huberty	5****y	5
Clemens Brunner	c**r@g**m	4
Eduard Ort	e**t@g**m	4
Kambiz Tavabi	k**i@g**m	4
Mathieu Scheltienne	m**e@g**m	4
Richard Koehler	r**r@o**e	4
Simon Kern	1****s	4
Laetitia Fesselier	l**r@g**m	3
Pierre Guetschel	2****h	3
Robert Luke	7****e	3
and 29 more...

Committer Domains (Top 20 + Academic)

brown.edu: 1 hotmail.co.uk: 1 yahoo.com.tw: 1 gmx.de: 1 ctb.upm.es: 1 th-ht.de: 1 outlook.de: 1 ae.mpg.de: 1 mccloy.info: 1 m4x.org: 1 yahoo.com.au: 1 mailbox.org: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time

Total issues: 140
Total pull requests: 393
Average time to close issues: 4 months
Average time to close pull requests: 6 days
Total issue authors: 52
Total pull request authors: 34
Average comments per issue: 4.97
Average comments per pull request: 2.46
Merged pull requests: 329
Bot issues: 1
Bot pull requests: 142

Past Year

Issues: 36
Pull requests: 158
Average time to close issues: 11 days
Average time to close pull requests: 4 days
Issue authors: 22
Pull request authors: 19
Average comments per issue: 1.56
Average comments per pull request: 2.08
Merged pull requests: 127
Bot issues: 1
Bot pull requests: 75

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Top Authors

Issue Authors

sappelhoff (32)
hoechenberger (17)
drammock (9)
adam2392 (7)
kaare-mikkelsen (5)
larsoner (5)
scott-huberty (4)
moritz-gerster (3)
dengemann (3)
skjerns (3)
laemtl (3)
eort (2)
JuliusWelzel (2)
bruAristimunha (2)
arnodelorme (2)

Pull Request Authors

pre-commit-ci[bot] (132)
sappelhoff (94)
hoechenberger (31)
drammock (29)
larsoner (27)
dependabot[bot] (10)
scott-huberty (8)
agramfort (7)
mscheltienne (5)
thht (5)
skjerns (5)
PierreGtch (4)
Aaronearlerichardson (3)
JuliusWelzel (3)
bootstrapbill (2)

Top Labels

Issue Labels

bug (38) enhancement (28) maint (12) API (4) Nice First Contribution Opportunity (4) code-health (3) doc (3) easy (3) bids (3) dataset-problem (2) question (1) MNE-Python (1) won't fix (1) tests (1) bids-validator (1)

Pull Request Labels

dependencies (10) enhancement (3) tests (2) hacktoberfest-accepted (1) bids-validator (1) maint (1) API (1) github_actions (1)

Packages

Total packages: 2
Total downloads:
- pypi 96,039 last-month
Total docker downloads: 110

Total dependent packages: 11
(may contain duplicates)
Total dependent repositories: 51
(may contain duplicates)
Total versions: 28
Total maintainers: 3

pypi.org: mne-bids

MNE-BIDS: Organizing MEG, EEG, and iEEG data according to the BIDS specification and facilitating their analysis with MNE-Python

Homepage: https://mne.tools/mne-bids
Documentation: https://mne.tools/mne-bids
License: BSD-3-Clause
Latest release: 0.16.0
published about 1 year ago

Versions: 18
Dependent Packages: 11
Dependent Repositories: 50
Downloads: 96,039 Last month
Docker Downloads: 110

Rankings

Dependent packages count: 1.0%

Dependent repos count: 2.1%

Docker downloads count: 2.6%

Downloads: 3.0%

Average: 3.4%

Forks count: 4.9%

Stargazers count: 6.8%

Maintainers (3)

mainakjas sappelhoff hoechenberger

Last synced: 4 months ago

conda-forge.org: mne-bids

Homepage: https://mne.tools/mne-bids/
License: BSD-3-Clause
Latest release: 0.11.1
published about 3 years ago

Versions: 10
Dependent Packages: 0
Dependent Repositories: 1

Rankings

Forks count: 21.7%

Dependent repos count: 24.3%

Average: 32.9%

Stargazers count: 33.9%

Dependent packages count: 51.6%

Last synced: 4 months ago

Dependencies

doc/requirements.txt pypi

matplotlib *
nilearn *
numpydoc *
pandas *
pillow *
pydata-sphinx-theme *
seaborn *
setuptools *
sphinx *
sphinx-copybutton *
sphinx_gallery *

test_requirements.txt pypi

EDFlib-Python >=1.0.6
check-manifest *
flake8 *
jinja2 *
matplotlib >=3.1
mne >=0.24
nibabel >=2.5
numpy >=1.16.0
openneuro-py >=2022.1
pandas >=0.24.0
pooch *
pybv >=0.7.3
pydocstyle *
pymatreader >=0.0.29
pytest *
pytest-cov *
pytest-sugar *
scipy >=1.5.0

.github/workflows/cffconvert.yml actions

actions/checkout v3 composite
citation-file-format/cffconvert-github-action 2.0.0 composite

.github/workflows/circle_artifacts.yml actions

larsoner/circleci-artifacts-redirector-action master composite

.github/workflows/unit_tests.yml actions

actions/cache v3 composite
actions/checkout v3 composite
actions/setup-node v3 composite
actions/setup-python v4 composite
codecov/codecov-action v3 composite

doc/_static/versions.json meteor

pyproject.toml pypi

setup.py pypi

MNE-BIDS

Science Score: 100.0%

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MNE-BIDS

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JOSS Publication

MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis

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pypi.org: mne-bids

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conda-forge.org: mne-bids

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