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compest3000

An open source composition estimator for microbial co-cultures

https://github.com/janmorlock/compest3000

Science Score: 44.0%

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Last synced: 6 months ago · JSON representation ·

Repository

An open source composition estimator for microbial co-cultures

Basic Info
  • Host: GitHub
  • Owner: Janmorlock
  • License: mit
  • Language: Python
  • Default Branch: main
  • Size: 11.7 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 1
  • Open Issues: 0
  • Releases: 0
Created almost 2 years ago · Last pushed about 1 year ago
Metadata Files
Readme License Citation

README.md

CompEst3000

An open source microbial composition estimator for co-cultures based on a system model and standard bioreactor measurements. To run the composition estimator you require the files in the config and lib directories, see runExample.py for an illustration.

Owner

  • Name: Jan
  • Login: Janmorlock
  • Kind: user

MSc Robotics, Systems and Control @ ETH Zurich

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: CompEst3000
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Jan
    family-names: Morlock
abstract: >-
  A microbial composition estimator for co-cultures based on
  a system model and standard bioreactor measurements.
keywords:
  - synthetic biology
  - cybergenetic control
  - co-culture
license: MIT
version: '1.0'
date-released: '2024-05-06'
repository-code: "https://github.com/Janmorlock/CompEst3000"

GitHub Events

Total
  • Push event: 2
  • Fork event: 1
Last Year
  • Push event: 2
  • Fork event: 1

Dependencies

requirements.txt pypi
  • matplotlib ==3.8.0
  • numpy ==1.26.1
  • openpyxl ==3.1.2
  • pandas ==2.1.1
  • progpy ==1.6
  • scipy ==1.11.3