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epoc-aki

📈 Evaluation of the Predictive value of short-term Oliguria and minor Creatinine increases for Acute Kidney Injury in ICU

https://github.com/alwinw/epoc-aki

Science Score: 39.0%

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Keywords

acute-kidney-failure aki bookdown classification creatinine kidney logistic-regression oliguria r rmd statistical-analysis time-series
Last synced: 6 months ago · JSON representation

Repository

📈 Evaluation of the Predictive value of short-term Oliguria and minor Creatinine increases for Acute Kidney Injury in ICU

Basic Info
  • Host: GitHub
  • Owner: alwinw
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 84.3 MB
Statistics
  • Stars: 9
  • Watchers: 0
  • Forks: 1
  • Open Issues: 1
  • Releases: 6
Topics
acute-kidney-failure aki bookdown classification creatinine kidney logistic-regression oliguria r rmd statistical-analysis time-series
Created about 6 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Citation

README.md

The EPOC-AKI Study

Evaluation of the Predictive value of short-term Oliguria and minor Creatinine increases for Acute Kidney Injury (AKI) in ICU

Data Overview

Definitions

Data Overview

Changes in Creatinine Episodes:

  • Creatinine change during episode (mol/L): cr
  • Duration of creatinine change episode (hrs): tcr_ch = Ti - (Ti - t)
  • Time between end of cr change epis and AKI (hrs or NA): taki = TAKI - Ti

Oliguria Episodes:

  • Time Oliguria identified: Tolig = T0
  • Time Oliguria episode started: Tolig_4 = T0 - 4
  • Time between olig epis and AKI (hrs or NA): taki - TAKI - T0

Exploration

Data Exploration

Example: Significant difference in creatinine changes 8 < tcr_ch < 12 between 'No AKI' and 'tAKI in 4-8 hrs'

Running

  1. Clone the repository and open the R project file epoc-aki.Rproj with RStudio

    bash git clone git@github.com:alwinw/epoc-api.git

  2. Preview the relevant bookdown file

  • Option 1: Open the file directly in RStudio
  1. Open up the bookdown index, e.g. `doc/full/index.Rmd`
  2. In RStudio run `Addins` > `Preview Book`, or from the console run

    ```R
    bookdown::serve_book()
    ```

  • Option 2: Run serve_book from the console

    ```R
bookdown::serve_book(dir = "doc/full/")
```
  1. Preview the bookdown site at http://localhost:4321/ or http://127.0.0.1:4321/

Contributors

Alwin Wang and Lisa Toh

Acknowledgements

Activity

GitHub commit activity GitHub last commit Visits GitHub repo size in bytes Total Lines

License

GitHub

Owner

  • Name: Alwin Wang
  • Login: alwinw
  • Kind: user
  • Location: Australia

Former design lead @MonashUAS

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