emcee v3
emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC - Published in JOSS (2019)
Science Score: 95.0%
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○CITATION.cff file
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✓.zenodo.json file
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Found 2 DOI reference(s) in README and JOSS metadata -
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Links to: arxiv.org -
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17 of 75 committers (22.7%) from academic institutions -
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✓JOSS paper metadata
Published in Journal of Open Source Software
Keywords
mcmc
mcmc-sampler
probabilistic-data-analysis
python
Keywords from Contributors
astronomy
astrophysics
exoplanet
bayesian-inference
parallel-computing
multiprocessing
mpi
physics
sunpy
sun
Scientific Fields
Mathematics
Computer Science -
84% confidence
Last synced: 4 months ago
·
JSON representation
Repository
The Python ensemble sampling toolkit for affine-invariant MCMC
Basic Info
- Host: GitHub
- Owner: dfm
- License: mit
- Language: Python
- Default Branch: main
- Homepage: https://emcee.readthedocs.io
- Size: 32.9 MB
Statistics
- Stars: 1,533
- Watchers: 84
- Forks: 437
- Open Issues: 63
- Releases: 18
Topics
mcmc
mcmc-sampler
probabilistic-data-analysis
python
Created about 14 years ago
· Last pushed 4 months ago
Metadata Files
Readme
Changelog
Contributing
License
Code of conduct
Authors
README.rst
emcee
=====
**The Python ensemble sampling toolkit for affine-invariant MCMC**
.. image:: https://img.shields.io/badge/GitHub-dfm%2Femcee-blue.svg?style=flat
:target: https://github.com/dfm/emcee
.. image:: https://github.com/dfm/emcee/workflows/Tests/badge.svg
:target: https://github.com/dfm/emcee/actions?query=workflow%3ATests
.. image:: http://img.shields.io/badge/license-MIT-blue.svg?style=flat
:target: https://github.com/dfm/emcee/blob/main/LICENSE
.. image:: http://img.shields.io/badge/arXiv-1202.3665-orange.svg?style=flat
:target: https://arxiv.org/abs/1202.3665
.. image:: https://coveralls.io/repos/github/dfm/emcee/badge.svg?branch=main&style=flat&v=2
:target: https://coveralls.io/github/dfm/emcee?branch=main
.. image:: https://readthedocs.org/projects/emcee/badge/?version=latest
:target: http://emcee.readthedocs.io/en/latest/?badge=latest
emcee is a stable, well tested Python implementation of the affine-invariant
ensemble sampler for Markov chain Monte Carlo (MCMC)
proposed by
`Goodman & Weare (2010) `_.
The code is open source and has
already been used in several published projects in the Astrophysics
literature.
Documentation
-------------
Read the docs at `emcee.readthedocs.io `_ if you find this code useful in your
research. The BibTeX entry for the paper is::
@article{emcee,
author = {{Foreman-Mackey}, D. and {Hogg}, D.~W. and {Lang}, D. and {Goodman}, J.},
title = {emcee: The MCMC Hammer},
journal = {PASP},
year = 2013,
volume = 125,
pages = {306-312},
eprint = {1202.3665},
doi = {10.1086/670067}
}
License
-------
Copyright 2010-2021 Dan Foreman-Mackey and contributors.
emcee is free software made available under the MIT License. For details see
the LICENSE file.
Owner
- Name: Dan Foreman-Mackey
- Login: dfm
- Kind: user
- Location: NYC
- Website: https://dfm.io
- Twitter: exoplaneteer
- Repositories: 318
- Profile: https://github.com/dfm
JOSS Publication
emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC
Published
November 17, 2019
Volume 4, Issue 43, Page 1864
Authors
Daniel Foreman-Mackey
Center for Computational Astrophysics, Flatiron Institute
Center for Computational Astrophysics, Flatiron Institute
Will M. Farr
Center for Computational Astrophysics, Flatiron Institute, Department of Physics and Astronomy, Stony Brook University, United States
Center for Computational Astrophysics, Flatiron Institute, Department of Physics and Astronomy, Stony Brook University, United States
Manodeep Sinha
Centre for Astrophysics & Supercomputing, Swinburne University of Technology, Australia, ARC Centre of Excellence for All Sky Astrophysics in 3 Dimensions (ASTRO 3D)
Centre for Astrophysics & Supercomputing, Swinburne University of Technology, Australia, ARC Centre of Excellence for All Sky Astrophysics in 3 Dimensions (ASTRO 3D)
Anne M. Archibald
University of Newcastle
University of Newcastle
David W. Hogg
Center for Computational Astrophysics, Flatiron Institute, Center for Cosmology and Particle Physics, Department of Physics, New York University
Center for Computational Astrophysics, Flatiron Institute, Center for Cosmology and Particle Physics, Department of Physics, New York University
Jeremy S. Sanders
Max Planck Institute for Extraterrestrial Physics
Max Planck Institute for Extraterrestrial Physics
Joe Zuntz
Institute for Astronomy, University of Edinburgh, Edinburgh, EH9 3HJ, UK
Institute for Astronomy, University of Edinburgh, Edinburgh, EH9 3HJ, UK
Peter K. g. Williams
Center for Astrophysics | Harvard & Smithsonian, American Astronomical Society
Center for Astrophysics | Harvard & Smithsonian, American Astronomical Society
Andrew R. j. Nelson
Australian Nuclear Science and Technology Organisation, NSW, Australia
Australian Nuclear Science and Technology Organisation, NSW, Australia
Miguel de Val-Borro
Planetary Science Institute, 1700 East Fort Lowell Rd., Suite 106, Tucson, AZ 85719, USA
Planetary Science Institute, 1700 East Fort Lowell Rd., Suite 106, Tucson, AZ 85719, USA
Tobias Erhardt
Climate and Environmental Physics and Oeschger Center for Climate Change Research, University of Bern, Bern, Switzerland
Climate and Environmental Physics and Oeschger Center for Climate Change Research, University of Bern, Bern, Switzerland
Ilya Pashchenko
P.N. Lebedev Physical Institute of the Russian Academy of Sciences, Moscow, Russia
P.N. Lebedev Physical Institute of the Russian Academy of Sciences, Moscow, Russia
Oriol Abril Pla
Universitat Pompeu Fabra, Barcelona
Universitat Pompeu Fabra, Barcelona
Editor
Juanjo Bazán
Tags
astronomyGitHub Events
Total
- Issues event: 2
- Watch event: 66
- Delete event: 2
- Issue comment event: 3
- Push event: 8
- Pull request event: 18
- Fork event: 10
- Create event: 5
Last Year
- Issues event: 2
- Watch event: 66
- Delete event: 2
- Issue comment event: 3
- Push event: 8
- Pull request event: 18
- Fork event: 10
- Create event: 5
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Dan F-M | d****m@n****u | 551 |
| pre-commit-ci[bot] | 6****] | 36 |
| Will Meierjurgen Farr | w****r@g****m | 32 |
| Anne Archibald | p****d@g****m | 25 |
| dependabot[bot] | 4****] | 24 |
| Erik Tollerud | e****d@g****m | 18 |
| David W. Hogg | d****g@g****m | 12 |
| Andrew Nelson | a****f@g****m | 10 |
| Nicholas S. Kern | n****n@b****u | 7 |
| Jeremy Sanders | j****y@j****t | 6 |
| Dustin Lang | d****n@a****u | 6 |
| Peter Williams | p****r@n****x | 5 |
| Dustin Lang | d****n@g****m | 5 |
| Manodeep Sinha | m****p@g****m | 4 |
| bencebeky | z****e@g****m | 4 |
| Miguel de Val-Borro | m****l@g****m | 3 |
| Adrian Price-Whelan | a****w@g****m | 3 |
| Joe Zuntz | j****z@g****m | 3 |
| Eric Dill | e****l@b****v | 3 |
| Miguel de Val-Borro | m****l@a****t | 3 |
| Alex Conley | a****y@c****u | 3 |
| Will Vousden | w****l@v****k | 3 |
| Oriol (Prodesk) | o****a@g****m | 2 |
| Ilya | i****o@g****m | 2 |
| Carlos Martin | c****n@a****u | 2 |
| Christopher Bradshaw | c****b@g****m | 2 |
| Laura Watkins | l****s@g****m | 2 |
| Andy Casey | a****y@m****u | 2 |
| Simon Walker | s****1@g****m | 2 |
| Tobias Erhardt | t****t@g****m | 2 |
| and 45 more... | ||
Committer Domains (Top 20 + Academic)
durham.ac.uk: 1
jasondavies.com: 1
gmx.de: 1
ligo.org: 1
mccluskey.scot: 1
mpp.mpg.de: 1
nd.edu: 1
climate-energy-college.org: 1
uni-tuebingen.de: 1
posteo.de: 1
astro.ox.ac.uk: 1
tu-dortmund.de: 1
uchicago.edu: 1
helioid.com: 1
flatironinstitute.org: 1
mso.anu.edu.au: 1
andrew.cmu.edu: 1
vousden.me.uk: 1
colorado.edu: 1
archlinux.net: 1
bnl.gov: 1
astro.princeton.edu: 1
berkeley.edu: 1
nyu.edu: 1
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 75
- Total pull requests: 121
- Average time to close issues: 3 months
- Average time to close pull requests: 10 days
- Total issue authors: 67
- Total pull request authors: 28
- Average comments per issue: 3.44
- Average comments per pull request: 0.94
- Merged pull requests: 95
- Bot issues: 0
- Bot pull requests: 78
Past Year
- Issues: 3
- Pull requests: 22
- Average time to close issues: 15 days
- Average time to close pull requests: 10 days
- Issue authors: 3
- Pull request authors: 6
- Average comments per issue: 0.67
- Average comments per pull request: 0.0
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 16
Top Authors
Issue Authors
- dfm (3)
- MuellerSeb (3)
- mtagliazucchi (2)
- kloczek (2)
- Nicolo97 (2)
- SwastikC (2)
- fardal (1)
- astromark (1)
- Sketos (1)
- gannonjs (1)
- jcblemai (1)
- Chris-Pedersen (1)
- Maryamtajalli (1)
- HuiTong5 (1)
- HannoJJacobs (1)
Pull Request Authors
- pre-commit-ci[bot] (41)
- dependabot[bot] (37)
- dfm (6)
- andyfaff (4)
- stefanarseneau (4)
- teobouvard (3)
- zachjweiner (2)
- yhwang17 (2)
- OriolAbril (2)
- MuellerSeb (2)
- DavidMStraub (1)
- emilioMaddalena (1)
- tilmantroester (1)
- arm61 (1)
- mercury0100 (1)
Top Labels
Issue Labels
Documentation (2)
Feature Request (1)
Pull Request Labels
dependencies (36)
github_actions (4)
Packages
- Total packages: 13
-
Total downloads:
- pypi 148,138 last-month
- Total docker downloads: 4,590
-
Total dependent packages: 188
(may contain duplicates) -
Total dependent repositories: 564
(may contain duplicates) - Total versions: 68
- Total maintainers: 2
pypi.org: emcee
The Python ensemble sampling toolkit for MCMC
- Homepage: https://emcee.readthedocs.io
- Documentation: https://emcee.readthedocs.io/
- License: MIT
-
Latest release: 3.1.6
published over 1 year ago
Rankings
Dependent packages count: 0.1%
Dependent repos count: 0.6%
Downloads: 1.0%
Average: 1.3%
Docker downloads count: 1.5%
Stargazers count: 1.8%
Forks count: 2.6%
Maintainers (1)
Last synced:
4 months ago
proxy.golang.org: github.com/dfm/emcee
- Documentation: https://pkg.go.dev/github.com/dfm/emcee#section-documentation
- License: mit
-
Latest release: v3.1.6+incompatible
published over 1 year ago
Rankings
Forks count: 1.4%
Stargazers count: 1.8%
Average: 5.9%
Dependent packages count: 9.6%
Dependent repos count: 10.8%
Last synced:
4 months ago
alpine-edge: py3-emcee-pyc
Precompiled Python bytecode for py3-emcee
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Forks count: 4.9%
Average: 6.6%
Stargazers count: 8.5%
Dependent packages count: 13.2%
Maintainers (1)
Last synced:
4 months ago
alpine-edge: py3-emcee
Python ensemble sampling toolkit for affine-invariant MCMC
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Forks count: 4.9%
Average: 6.6%
Stargazers count: 8.5%
Dependent packages count: 13.2%
Maintainers (1)
Last synced:
4 months ago
conda-forge.org: emcee
- Homepage: https://emcee.readthedocs.io
- License: MIT
-
Latest release: 3.1.3
published about 3 years ago
Rankings
Dependent packages count: 2.5%
Dependent repos count: 7.2%
Average: 7.2%
Forks count: 8.1%
Stargazers count: 11.1%
Last synced:
4 months ago
alpine-v3.22: py3-emcee-pyc
Precompiled Python bytecode for py3-emcee
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.20: py3-emcee-pyc
Precompiled Python bytecode for py3-emcee
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.22: py3-emcee
Python ensemble sampling toolkit for affine-invariant MCMC
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.20: py3-emcee
Python ensemble sampling toolkit for affine-invariant MCMC
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.21: py3-emcee
Python ensemble sampling toolkit for affine-invariant MCMC
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.21: py3-emcee-pyc
Precompiled Python bytecode for py3-emcee
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.6-r0
published over 1 year ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
4 months ago
alpine-v3.19: py3-emcee
Python ensemble sampling toolkit for affine-invariant MCMC
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.4-r0
published over 2 years ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Last synced:
4 months ago
alpine-v3.19: py3-emcee-pyc
Precompiled Python bytecode for py3-emcee
- Homepage: https://github.com/dfm/emcee
- License: MIT
-
Latest release: 3.1.4-r0
published over 2 years ago
Rankings
Dependent repos count: 0.0%
Dependent packages count: 0.0%
Average: 100%
Maintainers (1)
Last synced:
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Dependencies
docs/requirements.txt
pypi
- celerite *
- corner *
- h5py *
- matplotlib *
- myst-nb *
- scipy *
- sphinx-book-theme *
.github/workflows/tests.yml
actions
- actions/checkout v2 composite
- actions/download-artifact v2 composite
- actions/setup-python v2 composite
- actions/upload-artifact v2 composite
- pypa/gh-action-pypi-publish v1.4.2 composite
binder/environment.yml
pypi
- autograd *
- celerite *