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ecgdeli

This is ECGdeli - A selection of delicious algorithms for ECG delineation

https://github.com/kit-ibt/ecgdeli

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.3%) to scientific vocabulary

Keywords

detector ecg ecg-analyzer ecg-filtering ecg-qrs-detection filtering matlab wave
Last synced: 6 months ago · JSON representation ·

Repository

This is ECGdeli - A selection of delicious algorithms for ECG delineation

Basic Info
  • Host: GitHub
  • Owner: KIT-IBT
  • License: gpl-3.0
  • Language: MATLAB
  • Default Branch: master
  • Homepage:
  • Size: 3.32 MB
Statistics
  • Stars: 38
  • Watchers: 2
  • Forks: 19
  • Open Issues: 0
  • Releases: 4
Topics
detector ecg ecg-analyzer ecg-filtering ecg-qrs-detection filtering matlab wave
Created almost 6 years ago · Last pushed over 3 years ago
Metadata Files
Readme License Code of conduct Citation

README.md

ECGdeli - ECG delineation algorithms

ECGdeli is a Matlab toolbox for filtering and processing single or multilead ECGs.

Detailed description: Pilia, N., Nagel, C., Lenis, G., Becker, S., Dössel, O., Loewe, A. (2021) ECGdeli - An Open Source ECG Delineation Toolbox for MATLAB. SoftwareX 13:100639. doi:10.1016/j.softx.2020.100639

The filtering functionalities include: * baseline wander removal techniques * frequency filtering (highpass, lowpass and Notch filter) * isoline correction.

The ECGProcessing folder contains all files for automatically perform a waveform delineation. Executing `AnnotateECG_Multi.m` will add the timestamps of the onset, peak and offset of the P wave, the QRS complex and the T wave to an FPT table (fiducial point table) for each lead separately or synchronized over all available channels.

The test file Annotate_ExampleECG.m runs a filtering routine and the annotation process on a sample ECG also provided in the same folder to exemplarily show the functionalities of this toolbox. The example signal is taken from PTB Diagnostic ECG Database [1], available on physionet [2].

Please note the following points: * All algorithms must be used with ECGs as standing vectors or matrices with leads columnwise arranged (temporal dimension in lines) * Please respect our code of conduct (CODEOFCONDUCT.md) * We publish the software as it is and do not guarantee proper performance. Nevertheless, we highly acknowledge feedback. Use the issues functionality in github. * If you feel like contributing, just open a pull request.

ECGdeli depends on the following MATLAB toolboxes: * imagetoolbox * signaltoolbox * statisticstoolbox * wavelettoolbox

[1] Bousseljot R, Kreiseler D, Schnabel, A. Nutzung der EKG-Signaldatenbank CARDIODAT der PTB über das Internet. Biomedizinische Technik, Band 40, Ergänzungsband 1 (1995) S 317

[2] Goldberger A, Amaral L, Glass L, Hausdorff J, Ivanov PC, Mark R, Mietus JE, Moody GB, Peng CK, Stanley HE. PhysioBank, PhysioToolkit, and PhysioNet: Components of a new research resource for complex physiologic signals. Circulation [Online]. 101 (23), pp. e215–e220.

Owner

  • Name: KIT-IBT
  • Login: KIT-IBT
  • Kind: organization
  • Email: publications@ibt.kit.edu

Institute of Biomedical Engineering (IBT) at Karlsruhe Institute of Technology (KIT)

Citation (CITATION.cff) 

cff-version: 1.2.0
title: ECGdeli - ECG delineation algorithms
message: "Please cite this software using the metadata from 'preferred-citation'."
authors: 
  - given-names: Nicolas
    family-names: Pilia
    affiliation: Karlsruhe Institute of Technology (KIT)
    orcid: https://orcid.org/0000-0001-8247-379X
  - given-names: Claudia
    family-names: Nagel
    affiliation: Karlsruhe Institute of Technology (KIT)
    orcid: https://orcid.org/0000-0003-4193-7257
  - given-names: Gustavo
    family-names: Lenis
    affiliation: Karlsruhe Institute of Technology (KIT)
    orcid: https://orcid.org/0000-0002-8479-0040
  - given-names: Silvia
    family-names: Becker 
    orcid: https://orcid.org/0000-0002-1135-6446
  - given-names: Olaf
    family-names: Dössel
    affiliation: Karlsruhe Institute of Technology (KIT)
    orcid: https://orcid.org/0000-0003-4551-7970
  - given-names: Axel
    family-names: Loewe
    email: axel.loewe@kit.edu
    affiliation: Karlsruhe Institute of Technology (KIT)
    orcid: https://orcid.org/0000-0002-2487-4744  
version: 1.1
date-released: 2020-07-01
license: GPL-3.0-or-later
repository-code: https://github.com/KIT-IBT/ECGdeli
preferred-citation:
 type: article
 doi: 10.1016/j.softx.2020.100639
 title: ECGdeli - An open source ECG delineation toolbox for MATLAB
 authors:
   - family-names: Pilia
     given-names: Nicolas
   - family-names: Nagel
     given-names: Claudia
   - family-names: Lenis
     given-names: Gustavo
   - family-names: Becker
     given-names: Silvia
   - family-names: Dössel
     given-names: Olaf
   - family-names: Loewe
     given-names: Axel
 journal: SoftwareX
 year: 2021
 volume: 13
 pages: 100639
identifiers:
- description: This is the archived snapshot of version v1.1 of ECGdeli
  type: doi
  value: 10.5281/zenodo.7191379

GitHub Events

Total
  • Watch event: 8
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Last Year
  • Watch event: 8
  • Pull request event: 2
  • Fork event: 6