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us-mpx

Tracking Monkeypox Virus (MPX) infections reported in the United States

https://github.com/wf-id/us-mpx

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.6%) to scientific vocabulary

Keywords

epidemics epidemiology monkeypox mpx
Last synced: 6 months ago · JSON representation ·

Repository

Tracking Monkeypox Virus (MPX) infections reported in the United States

Basic Info
  • Host: GitHub
  • Owner: wf-id
  • License: mit
  • Language: R
  • Default Branch: main
  • Homepage:
  • Size: 1.85 MB
Statistics
  • Stars: 5
  • Watchers: 1
  • Forks: 3
  • Open Issues: 0
  • Releases: 1
Topics
epidemics epidemiology monkeypox mpx
Created over 3 years ago · Last pushed almost 2 years ago
Metadata Files
Readme License Citation

README.Md

DOI

Monkeypox Cases in the United States

This repository saves a copy of the posted reported monkeypox (MPX) cases for each state as recorded by the CDC on their website.

Key Functions

  • scrape.R saves a local snapshot of the aggregated cases as a json file in the data directory
  • aggregate.R reads the latest snapshots by date and then aggregated the output into the output/mpx.csv directory.

Key Output

  • Cumulative and new daily cases will be available in the mpx.csv file. The date reflects the last available update.

Terms and Conditions

The information on this website is for general informational purposes only and SHOULD NOT be relied upon as a substitute for sound professional medical advice, evaluation or care from your physician or other qualified health care provider.

The Website relies upon publicly available data that do not always agree. Authors hereby disclaims any and all representations and warranties with respect to the Website, including accuracy, fitness for use, reliability, completeness, and non-infringement of third party rights.

These terms and conditions are subject to change. Your use of the Website constitutes your acceptance of these terms and conditions and any future modifications thereof.

Owner

  • Name: Atrium Wake Forest Infectious Disease Research
  • Login: wf-id
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "DeWitt"
  given-names: "Michael E"
  orcid: "https://orcid.org/0000-0001-8940-1967"
title: "Monkeypox Cases in the United States"
version: v2023.01
doi: 10.5281/zenodo.7568637
date-released: 2023-01-25
url: "https://github.com/wf-id/us-mpx"

GitHub Events

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Dependencies

.github/workflows/main.yml actions
  • actions/cache v1 composite
  • actions/checkout v2 composite
  • quarto-dev/quarto-actions/install-quarto v1 composite
  • r-lib/actions/setup-r v2 composite
DESCRIPTION cran
  • bit64 * imports
  • data.table * imports
  • dplyr * imports
  • fs * imports
  • here * imports
  • jsonlite * imports
  • lubridate * imports
  • purrr * imports
  • rvest * imports
  • stringr * imports
  • validate * imports