sonic-pdb-parser
A sonic-speed PDB parser written in Zig
Science Score: 44.0%
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✓CITATION.cff file
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○Scientific vocabulary similarity
Low similarity (4.0%) to scientific vocabulary
Repository
A sonic-speed PDB parser written in Zig
Basic Info
Statistics
- Stars: 3
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
Sonic PDB Parser
A WIP sonic-speed PDB parser written in Zig. This project contains two modules (sonic and sonic-fasta) for importing into other Zig projects. Furthermore, there are two binaries, one for parsing and benchmarking PDB parsing (sonic-pdb-parser) and another for converting PDB files to FASTA files (pdb2fasta).
Usage - sonic-pdb-parser
sonic-pdb-parser -r <runs> -f <file> -o <output>
- -r -> specifies the number of times to run test, if r = 1, this will print the parsed file
- -f -> specifies the file you want to parse
- -o -> specifies the CSV you want to output to
- --json -> if r = 1, print the output as JSON
Usage - pdb2fasta
pdb2fasta -f <file>.pdb -o <out>.fasta
- -f -> specifies the file you want to convert
- -o -> specifies the output FASTA file
Goals
- [ ] Be able to completely parse the wwPDB 3.3 spec
- [ ] Provide WASM and/or C bindings
- [ ] Integrate FASTA conversion (BETA)
References
Owner
- Name: Ethan Holz
- Login: ethanholz
- Kind: user
- Location: Colorado Springs
- Company: Open Molecular Software Foundation
- Website: ethanholz.com
- Repositories: 95
- Profile: https://github.com/ethanholz
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: sonic-pdb-parser
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Ethan
family-names: Holz
email: ethan.holz@thoriumworks.com
orcid: 'https://orcid.org/0009-0001-7622-1446'
repository-code: 'https://github.com/ethanholz/sonic-pdb-parser'
license: MIT
date-released: '2024-05-31'
GitHub Events
Total
- Push event: 1
Last Year
- Push event: 1
Committers
Last synced: 9 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Ethan Holz | e****z@t****m | 59 |
| Travis Staloch | 1****h | 5 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 0
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: 5 days
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 3.5
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0