Science Score: 39.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.8%) to scientific vocabulary
Repository
Cell atlas
Basic Info
- Host: GitHub
- Owner: caltechlibrary
- License: other
- Language: TeX
- Default Branch: main
- Homepage: https://cellstructureatlas.org
- Size: 2.67 GB
Statistics
- Stars: 5
- Watchers: 6
- Forks: 2
- Open Issues: 8
- Releases: 8
Metadata Files
README.md
Cell atlas
Source for the "Atlas of Bacterial and Archaeal Cell Structure" by Catherine M. Oikonomou and Grant J. Jensen.
Table of contents
Installation
Install Pandoc Version >= 2.11 and Python Version >=3.
Usage
Run the build script using:
``` python3 _build.py
or (depending on python configuration)
python _build.py ```
This will delete the site/ directory in the this script's working directory.
Videos are will not be included in the site build and need to be moved to a videos directory
in 'site' directory.
Supplemental files (video preview images, narration, and pdb files) are required for the
site to function completely and are available to
download from CaltechDATA
Offline versions of the cell atlas are automatically generated in the
cell_atlas_offline and cell_atlas_offline_lite directories, assuming you
have "video", "videos-480p", "narration", and "stillimages" directories present.
In order to zip up the offline version, navigate to cell_atlas_offline and cell_atlas_offline_lite directories
and use the command zip -rX cell_atlas_offline_lite.zip *
You can optionally create .webp version of image files by installing
cwebp and running python
_webp.py stillimages. The site will always fall back to the .jpg images if the
.webp versions are not available or not suported.
Getting help
Please submit an issue using the issue tracker in this repo
Contributing
You can submit change requests by submitting a pull request through GitHub.
License
Software produced by the Caltech Library is Copyright (C) 2023, Caltech. This software is freely distributed under a BSD/MIT type license. Please see the LICENSE file for more information.
The book text is (C) 2023, Caltech.
Authors and Acknowledgments
Catherine M. Oikonomou and Grant J. Jensen wrote "Atlas of Bacterial and Archaeal Cell Structure". See the full list of Acknowledgments in the book text.
Kian Badie, Tom Morrell, and Robert Doiel developed the software in this repository that automates book formatting and integrates videos from CaltechDATA.
Software Development was funded by the California Institute of Technology Library and the Jensen Lab.
"File" icon by Vectorstall from the Noun Project.
"Video" icon by i cons from the Noun Project.
"Image" by Dooder from the Noun Project.
"cycle" by ImageCatalog from the Noun Project.
Owner
- Name: Caltech Library
- Login: caltechlibrary
- Kind: organization
- Email: helpdesk@library.caltech.edu
- Location: Pasadena, CA 91125
- Website: https://www.library.caltech.edu/
- Repositories: 84
- Profile: https://github.com/caltechlibrary
We manage the physical and digital holdings of the California Institute of Technology, provide services and training, and develop open-source software.
CodeMeta (codemeta.json)
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"description": "Source for the 'Atlas of Bacterial and Archaeal Cell Structure'",
"name": "Cell Atlas",
"codeRepository": "https://github.com/caltechlibrary/cell-atlas",
"issueTracker": "https://github.com/caltechlibrary/cell-atlas/issues",
"license": "https://data.caltech.edu/license",
"version": "2.3.0",
"author": [
{
"@type": "Person",
"givenName": "Catherine",
"familyName": "Oikonomou",
"affiliation": "Caltech",
"@id": "https://orcid.org/0000-0003-2312-4746"
},
{
"@type": "Person",
"givenName": "Grant",
"familyName": "Jensen",
"affiliation": "Caltech",
"@id": "https://orcid.org/0000-0003-1556-4864"
},
{
"@type": "Person",
"givenName": "Thomas E",
"familyName": "Morrell",
"affiliation": "Caltech Library",
"email": "tmorrell@caltech.edu",
"@id": "https://orcid.org/0000-0001-9266-5146"
},
{
"@type": "Person",
"givenName": "Kian",
"familyName": "Badie"
}
],
"developmentStatus": "active",
"downloadUrl": "https://github.com/caltechlibrary/cellatlas/archive/v2.0.0.zip",
"keywords": [
"GitHub",
"Atlas of Bacterial and Archaeal Cell Structure",
"CryoEM",
"Jensen Lab"
],
"maintainer": "https://orcid.org/0000-0001-9266-5146",
"programmingLanguage": "Python"
}GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 61
- Total pull requests: 1
- Average time to close issues: about 2 months
- Average time to close pull requests: about 2 months
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 14.92
- Average comments per pull request: 1.0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- KianBadie (49)
Pull Request Authors
- KianBadie (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- peaceiris/actions-gh-pages v3 composite