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workflow-registration

https://github.com/bioinfotongli/workflow-registration

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.6%) to scientific vocabulary
Last synced: 7 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: BioinfoTongLI
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 2.06 MB
Statistics
  • Stars: 2
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created over 3 years ago · Last pushed over 1 year ago
Metadata Files
Readme Citation

README.md

Prerequisites

Make sure nextflow, conda and singularity (or docker) are in the PATH.

Quick start (lsf)

  1. git pull this repo
  2. Go to interactive session (you will need access to imaging queue): bsub -q imaging -n1 -M6000 -R"select[mem>6000] rusage[mem=6000]" -Is $SHELL
  3. Run bash lsf.sh [path-to-yaml-config], in a folder where you have write permission

Owner

  • Name: Tong LI
  • Login: BioinfoTongLI
  • Kind: user
  • Location: Hinxton
  • Company: Wellcome Sanger Institute

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this pipeline, please cite it"
authors:
  family-names: "LI"
  given-names: "Tong"
  orcid: "https://orcid.org/0000-0002-8240-4476"
title: "A nextflow pipeline wrapping several registration tools"
version: 0.0.1
date-released: 2022-05-08
license: Apache-2.0
url: "https://github.com/BayraktarLab"

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