graphite

This is a read-only mirror of the git repos at https://bioconductor.org

https://github.com/bioc/graphite

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic links in README
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (0.6%) to scientific vocabulary

Last synced: 7 months ago · JSON representation ·

Repository

This is a read-only mirror of the git repos at https://bioconductor.org

Basic Info

Host: GitHub
Owner: bioc
Language: R
Default Branch: devel
Size: 33.6 MB

Statistics

Stars: 0
Watchers: 2
Forks: 0
Open Issues: 0
Releases: 0

Created over 2 years ago · Last pushed over 1 year ago

Metadata Files

Citation

Owner

Name: bioc
Login: bioc
Kind: organization

Repositories: 1
Profile: https://github.com/bioc

Citation (CITATION.cff)

# -----------------------------------------------------------
# CITATION file created with {cffr} R package, v0.1.1
# See also: https://docs.ropensci.org/cffr/
# -----------------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "graphite" in publications use:'
type: software
license: AGPL-3.0-only
title: 'graphite: GRAPH Interaction from pathway Topological Environment'
version: 1.41.1
abstract: Graph objects from pathway topology derived from KEGG, Panther, PathBank,
  PharmGKB, Reactome SMPDB and WikiPathways databases.
authors:
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
- family-names: Calura
  given-names: Enrica
  email: enrica.calura@gmail.com
- family-names: Romualdi
  given-names: Chiara
  email: chiara.romualdi@unipd.it
preferred-citation:
  type: article
  title: graphite - a Bioconductor package to convert pathway topology to gene network
  authors:
  - family-names: Sales
    given-names: Gabriele
  - family-names: Calura
    given-names: Enrica
  - family-names: Cavalieri
    given-names: Duccio
  - family-names: Romualdi
    given-names: Chiara
  journal: BMC Bioinformatics
  year: '2012'
  url: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-20
repository: https://bioconductor.org/
date-released: '2021-11-30'
contact:
- family-names: Sales
  given-names: Gabriele
  email: gabriele.sales@unipd.it
references:
- type: article
  title: metaGraphite - a new layer of pathway annotation to get metabolite networks
  authors:
  - family-names: Sales
    given-names: Gabriele
  - family-names: Calura
    given-names: Enrica
  - family-names: Romualdi
    given-names: Chiara
  journal: Bioinformatics
  year: '2018'
  url: https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty719/5090451

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