Spruceup - v2024.7.22

• Minor updates to previous major release
• Now precision preserved in internal calculations, rounded only for writing
• Installation instructions include Docker option

Scientific Software - Peer-reviewed - Python
Published by marekborowiec almost 2 years ago

Spruceup -

Major update

• Changed how distances are computed in gappy regions, increasing sensitivity
• Swapped lognormal distribution for Weibull for better fit to diverse datasets
• Fixed issue with writing NEXUS trimmed output
• Streamlined distance calculations code

Scientific Software - Peer-reviewed - Python
Published by marekborowiec almost 2 years ago

Spruceup -

• Fixed issue preventing using manual cutoffs above 1 with lognorm criterion.

Scientific Software - Peer-reviewed - Python
Published by marekborowiec over 4 years ago

Spruceup -

• Fixed issue plotting manual cutoffs with mean criterion, added some explanations around manual cutoffs to documentation, and added "manual" label to plots.

Scientific Software - Peer-reviewed - Python
Published by marekborowiec over 6 years ago

Spruceup -

• Fixed incorrect plotting for samples where manual cutoffs are used
• This is the JOSS publication release

Scientific Software - Peer-reviewed - Python
Published by marekborowiec over 6 years ago

Spruceup -

Some major modifications to how spruceup is used:

• spruceup is now called as a python module rather than script
• testing now easy thanks to unittest integrated with setuptools
• incorporates feedback received through reviews for Journal of Open Source Software

Scientific Software - Peer-reviewed - Python
Published by marekborowiec over 6 years ago