https://github.com/erictleung/microbiome-analysis-resources
:microscope: Resources and notes on studying the human microbiome
Science Score: 36.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
○CITATION.cff file
-
✓codemeta.json file
Found codemeta.json file -
○.zenodo.json file
-
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: ncbi.nlm.nih.gov, sciencedirect.com, plos.org -
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (6.9%) to scientific vocabulary
Keywords
bioinformatics
data-analysis
gut-microbiome
microbiology
microbiome
notes
resources
Last synced: 4 months ago
·
JSON representation
Repository
:microscope: Resources and notes on studying the human microbiome
Basic Info
Statistics
- Stars: 3
- Watchers: 1
- Forks: 0
- Open Issues: 3
- Releases: 0
Topics
bioinformatics
data-analysis
gut-microbiome
microbiology
microbiome
notes
resources
Created over 8 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
README.md
Human Microbiome Analysis Guide
Guides on analyzing the human microbiome.
Table of Contents
- Statistical References
- Tutorials and Online Courses
- Software
- Journal Clubs
- Topic and Collections
- License
Statistical References
Tutorials and Online Courses
- Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses
- Microbiome Discovery with Dan Knights
- Riffomonas Reproducible Research Tutorial Series
- SISMID Microbiome Data Analysis 2017
- SISMID Microbiome Data Analysis 2018
- Open & Reproducible Microbiome Data Analysis Spring School 2018
- Amplicon Analysis - AstrobioMike
- Strategies and Techniques for Analyzing Microbial Population Structures (STAMPS) (2019)
- 16S rRNA analysis by Rachael Lappan
- Dr. Rosen's Computational Metagenomics Special Topics Course
Software
- Advancing our understanding of the human microbiome using QIIME - Overview of the motivation for the well-known analysis package, QIIME, and an entire workflow from preprocessing to diversity analysis and more. Highlights 16S rRNA sequencing analysis.
Journal Clubs
- META Center for Systems Biology - Journal club at the University of Oregon Microbial Ecology and Theory of Animals (META) Center.
- McMaster Human Microbiome Journal Club - Journal club at the McMaster University in Ontario, Canada.
Topic and Collections
License
To the extent possible under law, Eric Leung has waived all copyright and related or neighboring rights to this work.
Owner
- Name: Eric Leung
- Login: erictleung
- Kind: user
- Location: New York, NY
- Website: https://erictleung.com
- Repositories: 169
- Profile: https://github.com/erictleung
Data science generalist. Sharing knowledge and optimizing tools for learning and growth. Open-source and open-data advocate. Community learner.
GitHub Events
Total
Last Year
Committers
Last synced: about 1 year ago
Top Committers
| Name | Commits | |
|---|---|---|
| Eric Leung | e****c@e****m | 27 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 3
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 1
- Total pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- erictleung (3)
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels
Dependencies
.github/workflows/test.yml
actions
- actions/checkout v2 composite
- ruby/setup-ruby v1 composite