vrl-swc-density-vis
Density visualization plugin for neuronal morphologies
Science Score: 44.0%
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Scientific vocabulary similarity
Low similarity (7.8%) to scientific vocabulary
Keywords
Repository
Density visualization plugin for neuronal morphologies
Basic Info
- Host: GitHub
- Owner: stephanmg
- License: artistic-2.0
- Language: Java
- Default Branch: master
- Homepage: http://www.neurobox.eu
- Size: 40.1 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 1
Topics
Metadata Files
README.md
VRL-SWC-Density-Vis
A VRL Studio plugin for the density visualization and subsequent analysis of stacks of neuronal morphologies specified in the common SWC file format (cf. neuromorpho database) compatible with e. g. Neurolucida, NEURON or GENESIS. By extending the existing VRL-Density-Vis plugin for the matter in hand, the VRL-SWC-Density-Vis plugin integrates flawless within the novel NeuroBox 3D toolbox for detailed simulations and analysis in Computational Neuroscience (compare the organization NeuroBox3D). For a specification of the SWC file format cf. NeuroLand.
CI and license
Literature
You are obliged to cite the following reference (See in Bibtex format here) if you use the software to analyze and publish results: Grein Stephan, Qi Guanxiao, Queisser Gillian (2020): Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis in Frontiers in Computational Neuroscience for From Neuronal Network to Artificial Neural Network: Structure, Function and Intelligence
Owner
- Name: Stephan Grein
- Login: stephanmg
- Kind: user
- Location: Germany, NRW
- Company: University of Bonn, LIMES/HCM
- Website: https://www.mathematics-and-life-sciences.uni-bonn.de/en/group-members/stephan-grein
- Twitter: smgrein
- Repositories: 104
- Profile: https://github.com/stephanmg
Applied Mathematician, PhD
Citation (CITATION.cff)
message: "If you use this software, please cite it as below."
authors:
- family-names: Grein
given-names: Stephan
title: " Density Visualization Pipeline: A Tool for Cellular and Network Density Visualization and Analysis"
version: 1.0
doi: 10.3389/fncom.2020.00042
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: 9 months ago
All Time
- Total issues: 64
- Total pull requests: 2
- Average time to close issues: over 1 year
- Average time to close pull requests: 1 minute
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.55
- Average comments per pull request: 1.0
- Merged pull requests: 2
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- stephanmg (40)
Pull Request Authors
- codacy-badger (1)
Top Labels
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Pull Request Labels
Dependencies
- edu.gcsc.vrl.densityvis:Density-Vis * compile
- edu.gcsc.vrl.jfreechart:JFreeChart * compile
- eu.mihosoft.vrl:vrl * compile