microplastic_count
Google Colab and Jupyter to process images with red-fluorescent microplastics.
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.7%) to scientific vocabulary
Repository
Google Colab and Jupyter to process images with red-fluorescent microplastics.
Basic Info
- Host: GitHub
- Owner: van-castillo
- License: bsd-2-clause
- Language: Jupyter Notebook
- Default Branch: main
- Size: 40.6 MB
Statistics
- Stars: 0
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
microplastic_count
Google Colab and Jupyter notebook to process images with red-fluorescent microplastics.
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Bigger than 5.23 micrometers microplastics count: 147
5.0 micrometers microplastics count: 50
Minor than 4,73 micrometers microplastics count: 6831
Particles >=4.77µm and <=5.23µm Stats:
Mean Size: 4.97790268876648 µm, Standard Deviation: 0.13715808988778208 µm\
Particles <4.77µm Stats:
Mean Size: 1.7807436883006373 µm, Standard Deviation: 0.7012415256042535 µm
Particles >5.23µm Stats:
Mean Size: 8.571408801316243 µm, Standard Deviation: 7.763226028830422 µm
Table of Contents
Usage
Option 1: Using Google Colab
- Open the Google Colab Notebook
Click the link to open the Google Colab notebook.
Option 2: Using Jupyter Notebook locally
- Open the Jupyter Notebook
Click the link to open the Jupyter notebook).
- Run the Notebook
Follow the steps in the notebook to process your images. Replace 'my_image_exact_name.jpg' with the path to your image file in the appropriate cell.
- Image Processing
The notebook processes the image, detects particles, and classifies them based on size. Results are visualized using histograms and annotated images.
License
This project is licensed under the MIT License. See the LICENSE file for details.
Cite
APA
Castillo, V. D. P., & Santos, E. F. D. (2024). Google Colab and Jupyter to process images with red-fluorescent microplastics. (Version 1.0.0) [Computer software]. https://doi.org/https://zenodo.org/doi/10.5281/zenodo.12775584
BibTeX
tex
@software{Castillo_Google_Colab_and_2024,
author = {Castillo, Vanessa Dina Palomino and Santos, Ezequiel França dos},
doi = {https://zenodo.org/doi/10.5281/zenodo.12775584},
month = jul,
title = {{Google Colab and Jupyter to process images with red-fluorescent microplastics.}},
url = {https://github.com/van-castillo/microplastic_count},
version = {1.0.0},
year = {2024}
}
Owner
- Name: Vanessa Castillo
- Login: van-castillo
- Kind: user
- Repositories: 1
- Profile: https://github.com/van-castillo
Citation (CITATION.cff)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Castillo" given-names: "Vanessa Dina Palomino" orcid: "https://orcid.org/0009-0002-0520-7919" - family-names: "Santos" given-names: "Ezequiel França dos" orcid: "https://orcid.org/0000-0001-9321-8444" title: "Google Colab and Jupyter to process images with red-fluorescent microplastics." version: 1.0.0 doi: https://zenodo.org/doi/10.5281/zenodo.12775584 date-released: 2024-07-19 url: "https://github.com/van-castillo/microplastic_count"