qnm
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients - Published in JOSS (2019)
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Published in Journal of Open Source Software
Keywords
Repository
Python package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients
Basic Info
- Host: GitHub
- Owner: duetosymmetry
- License: mit
- Language: Python
- Default Branch: master
- Homepage: https://qnm.readthedocs.io
- Size: 7.97 MB
Statistics
- Stars: 46
- Watchers: 7
- Forks: 23
- Open Issues: 13
- Releases: 6
Topics
Metadata Files
README.md
Welcome to qnm
qnm is an open-source Python package for computing the Kerr
quasinormal mode frequencies, angular separation constants, and
spherical-spheroidal mixing coefficients. The qnm package includes a
Leaver solver with the Cook-Zalutskiy spectral
approach to the angular sector, and
a caching mechanism to avoid repeating calculations.
With this python package, you can compute the QNMs labeled by different (s,l,m,n), at a desired dimensionless spin parameter 0≤a<1. The angular sector is treated as a spectral decomposition of spin-weighted spheroidal harmonics into spin-weighted spherical harmonics. Therefore you get the spherical-spheroidal decomposition coefficients for free when solving for ω and A (see below for details).
We have precomputed a large cache of low-lying modes (s=-2 and s=-1, all l<8, all n<7). These can be automatically installed with a single function call, and interpolated for good initial guesses for root-finding at some value of a.
Installation
PyPI
qnm is available on PyPI:
shell
pip install qnm
Conda
qnm is available on conda-forge:
shell
conda install -c conda-forge qnm
From source
shell
git clone https://github.com/duetosymmetry/qnm.git
cd qnm
python setup.py install
If you do not have root permissions, replace the last step with
python setup.py install --user. Instead of using setup.py
manually, you can also replace the last step with pip install . or
pip install --user ..
Dependencies
All of these can be installed through pip or conda.
* numpy
* scipy
* numba
* tqdm (just for qnm.download_data() progress)
Documentation
Automatically-generated API documentation is available on Read the Docs: qnm.
For a didactic introduction, you can watch my talk at the Spring 2020 BHPToolkit Workshop (starting around 4:11:02 in the stream. You can also follow along with the qnm presentation notebook.
Usage
The highest-level interface is via qnm.cached.KerrSeqCache, which
loads cached spin sequences from disk. A spin sequence is just a mode
labeled by (s,l,m,n), with the spin a ranging from a=0 to some
maximum, e.g. 0.9995. A large number of low-lying spin sequences have
been precomputed and are available online. The first time you use the
package, download the precomputed sequences:
```python import qnm
qnm.download_data() # Only need to do this once
Trying to fetch https://duetosymmetry.com/files/qnm/data.tar.bz2
Trying to decompress file //qnm/data.tar.bz2
Data directory //qnm/data contains 860 pickle files
```
Then, use qnm.modes_cache to load a
qnm.spinsequence.KerrSpinSeq of interest. If the mode is not
available, it will try to compute it (see detailed documentation for
how to control that calculation).
```python grav220 = qnm.modescache(s=-2,l=2,m=2,n=0) omega, A, C = grav_220(a=0.68) print(omega)
(0.5239751042900845-0.08151262363119974j)
```
Calling a spin sequence seq with seq(a) will return the complex
quasinormal mode frequency omega, the complex angular separation
constant A, and a vector C of coefficients for decomposing the
associated spin-weighted spheroidal harmonics as a sum of
spin-weighted spherical harmonics (see below for
details).
Visual inspections of modes are very useful to check if the solver is
behaving well. This is easily accomplished with matplotlib. Here are
some partial examples (for the full examples, see the file
notebooks/examples.ipynb in the source repo):
```python import numpy as np import matplotlib as mpl import matplotlib.pyplot as plt
s, l, m = (-2, 2, 2) modelist = [(s, l, m, n) for n in np.arange(0,7)] modes = { ind : qnm.modescache(*ind) for ind in mode_list }
plt.subplot(1, 2, 1) for mode, seq in modes.items(): plt.plot(np.real(seq.omega),np.imag(seq.omega))
plt.subplot(1, 2, 2) for mode, seq in modes.items(): plt.plot(np.real(seq.A),np.imag(seq.A)) ```
Which results in the following figure (modulo formatting):

```python s, l, n = (-2, 2, 0) modelist = [(s, l, m, n) for m in np.arange(-l,l+1)] modes = { ind : qnm.modescache(*ind) for ind in mode_list }
plt.subplot(1, 2, 1) for mode, seq in modes.items(): plt.plot(np.real(seq.omega),np.imag(seq.omega))
plt.subplot(1, 2, 2) for mode, seq in modes.items(): plt.plot(np.real(seq.A),np.imag(seq.A)) ```
Which results in the following figure (modulo formatting):

Precision and validation
The default tolerances for continued fractions, cf_tol, is 1e-10, and
for complex root-polishing, tol, is DBL_EPSILON≅1.5e-8. These can
be changed at runtime so you can re-polish the cached values to higher
precision.
Greg Cook's precomputed data
tables (which were computed with
arbitrary-precision arithmetic) can be used for validating the results
of this code. See the comparison notebook
notebooks/Comparison-against-Cook-data.ipynb
to see such a comparison, which can be modified to compare any of the
available modes.
Spherical-spheroidal decomposition
The angular dependence of QNMs are naturally spin-weighted spheroidal harmonics. The spheroidals are not actually a complete orthogonal basis set. Meanwhile spin-weighted spherical harmonics are complete and orthonormal, and are used much more commonly. Therefore you typically want to express a spheroidal (on the left hand side) in terms of sphericals (on the right hand side),
Here ℓmin=max(|m|,|s|) and ℓmax can be chosen at run time. The C
coefficients are returned as a complex ndarray, with the zeroth
element corresponding to ℓmin.
To avoid indexing errors, you can get the ndarray of ℓ values by
calling qnm.angular.ells, e.g.
ells = qnm.angular.ells(s=-2, m=2, l_max=grav_220.l_max)
Contributing
Contributions are welcome! There are at least two ways to contribute to this codebase:
- If you find a bug or want to suggest an enhancement, use the issue tracker on GitHub. It's a good idea to look through past issues, too, to see if anybody has run into the same problem or made the same suggestion before.
- If you will write or edit the python code, we use the fork and pull request model.
You are also allowed to make use of this code for other purposes, as detailed in the MIT license. For any type of contribution, please follow the code of conduct.
How to cite
If this package contributes to a project that leads to a publication,
please acknowledge this by citing the qnm article in JOSS. The
following BibTeX entry is available in the qnm.__bibtex__ string:
@article{Stein:2019mop,
author = "Stein, Leo C.",
title = "{qnm: A Python package for calculating Kerr quasinormal
modes, separation constants, and spherical-spheroidal
mixing coefficients}",
journal = "J. Open Source Softw.",
volume = "4",
year = "2019",
number = "42",
pages = "1683",
doi = "10.21105/joss.01683",
eprint = "1908.10377",
archivePrefix = "arXiv",
primaryClass = "gr-qc",
SLACcitation = "%%CITATION = ARXIV:1908.10377;%%"
}
Credits
The code is developed and maintained by Leo C. Stein.
Owner
- Name: Leo C. Stein
- Login: duetosymmetry
- Kind: user
- Website: https://duetosymmetry.com/
- Twitter: duetosymmetry
- Repositories: 80
- Profile: https://github.com/duetosymmetry
Assistant Professor of Physics and Astronomy at U of MS. Gravitational waves, general relativity and beyond. Formerly at @caltech, @mit, Cornell
JOSS Publication
qnm: A Python package for calculating Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients
Authors
Tags
physics general relativity black holesCitation (CITATION.bib)
@article{Stein:2019mop,
author = "Stein, Leo C.",
title = "{qnm: A Python package for calculating Kerr quasinormal
modes, separation constants, and spherical-spheroidal
mixing coefficients}",
journal = "J. Open Source Softw.",
volume = "4",
year = "2019",
number = "42",
pages = "1683",
doi = "10.21105/joss.01683",
eprint = "1908.10377",
archivePrefix = "arXiv",
primaryClass = "gr-qc",
SLACcitation = "%%CITATION = ARXIV:1908.10377;%%"
}
CodeMeta (codemeta.json)
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"name": "qnm: Kerr quasinormal modes, separation constants, and spherical-spheroidal mixing coefficients calculator",
"description": "qnm computes the Kerr quasinormal mode frequencies, angular separation constants, and spherical-spheroidal mixing coefficients. The qnm package includes a Leaver solver with the Cook-Zalutskiy spectral approach to the angular sector, and a caching mechanism to avoid repeating calculations. A large cache of low ℓ, m, n modes is available for download and can be installed with a single function call and interpolated to provide good initial guess for root-polishing at new values of spin.",
"identifier": "ascl:1910.022",
"author": [
{
"@type": "Person",
"givenName": "Leo C.",
"familyName": "Stein",
"id": "https://orcid.org/0000-0001-7559-9597"
}
],
"citation": "https://inspirehep.net/record/1751578",
"relatedLink": [
"https://pypi.org/project/qnm/",
"https://qnm.readthedocs.io/",
"https://doi.org/10.5281/zenodo.2593978",
"https://arxiv.org/abs/1908.10377"
],
"codeRepository": "https://github.com/duetosymmetry/qnm",
"programmingLanguage": "python",
"referencePublication": [
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"url": "https://inspirehep.net/record/1751578",
"id": "https://doi.org/10.21105/joss.01683"
}
],
"version": "0.4.0",
"license": "https://spdx.org/licenses/MIT.html"
}
GitHub Events
Total
- Issues event: 1
- Watch event: 7
- Issue comment event: 10
- Push event: 9
- Pull request review event: 4
- Pull request review comment event: 2
- Pull request event: 7
- Fork event: 6
- Create event: 2
Last Year
- Issues event: 1
- Watch event: 7
- Issue comment event: 10
- Push event: 9
- Pull request review event: 4
- Pull request review comment event: 2
- Pull request event: 7
- Fork event: 6
- Create event: 2
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Leo C. Stein | l****n@g****m | 209 |
| Duncan Macleod | m****m@c****k | 3 |
| Raffi Enficiaud | r****d@m****g | 2 |
| Lorena Magana zertuche | l****z@g****u | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 29
- Total pull requests: 11
- Average time to close issues: about 2 months
- Average time to close pull requests: 29 days
- Total issue authors: 5
- Total pull request authors: 6
- Average comments per issue: 0.83
- Average comments per pull request: 1.09
- Merged pull requests: 7
- Bot issues: 0
- Bot pull requests: 1
Past Year
- Issues: 2
- Pull requests: 8
- Average time to close issues: 3 months
- Average time to close pull requests: 6 days
- Issue authors: 1
- Pull request authors: 3
- Average comments per issue: 2.5
- Average comments per pull request: 1.13
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 1
Top Authors
Issue Authors
- duetosymmetry (22)
- duncanmmacleod (3)
- IanHawke (2)
- raffienficiaud (1)
- Editst (1)
Pull Request Authors
- duncanmmacleod (5)
- raffienficiaud (2)
- AlexKurek (2)
- lmagana3 (1)
- dependabot[bot] (1)
- TrellixVulnTeam (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 2
-
Total downloads:
- pypi 1,012 last-month
-
Total dependent packages: 3
(may contain duplicates) -
Total dependent repositories: 9
(may contain duplicates) - Total versions: 20
- Total maintainers: 1
pypi.org: qnm
Package for computing Kerr quasinormal mode frequencies, separation constants, and spherical-spheroidal mixing coefficients
- Homepage: https://github.com/duetosymmetry/qnm/
- Documentation: https://qnm.readthedocs.io/
- License: MIT License
-
Latest release: 0.4.4
published 9 months ago
Rankings
Maintainers (1)
conda-forge.org: qnm
qnm is an open-source Python package for computing the Kerr quasinormal mode frequencies, angular separation constants, and spherical-spheroidal mixing coefficients. The qnm package includes a Leaver solver with the Cook-Zalutskiy spectral approach to the angular sector, and a caching mechanism to avoid repeating calculations.
- Homepage: https://github.com/duetosymmetry/qnm/
- License: MIT
-
Latest release: 0.4.3
published about 6 years ago
Rankings
Dependencies
- numba >=0.49.1
- numpydoc *
- recommonmark ==0.6.0
- sphinx ==1.8.4
- numba *
- numpy *
- pathlib2 *
- scipy *
- tqdm *
- numba *
- numpy *
- pathlib2 *
- scipy *
- tqdm *
- actions/checkout v1 composite
- actions/setup-python v1 composite
- actions/checkout v1 composite
- actions/setup-python v1 composite
