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Recent Releases of pangeo-fish

pangeo-fish - 2025.03.3

What's Changed

  • Update CITATION.cff by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/185

Full Changelog: https://github.com/pangeo-fish/pangeo-fish/compare/2025.03.2...2025.03.3

- Python
Published by tinaok 11 months ago

pangeo-fish - 2025.03.2

What's Changed

  • Accounting for CF information in bins for reshaping_by_bins() by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/177
  • Link to report issues by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/178
  • Healpixify renaming by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/179
  • Notebook's language info are removed in pre-commit by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/180
  • Fixing xarray dependency by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/181
  • Add version number in the helpers' results. by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/184

Full Changelog: https://github.com/pangeo-fish/pangeo-fish/compare/2025.03.1...2025.03.2

- Python
Published by tinaok 11 months ago

pangeo-fish - 2025.03.1

First DOI Release

What's Changed

  • allow skipping CI based on a label by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/163
  • package metadata by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/171
  • Update README.md by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/165
  • Add doi by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/175

Full Changelog: https://github.com/pangeo-fish/pangeo-fish/compare/2025.03.0...2025.03.1

- Python
Published by tinaok 12 months ago

pangeo-fish - 2025.03.0

Initial release.

What's Changed

  • import the healpy regridding by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/2
  • step 3: compute the emission probability matrix from the regridded differences by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/4
  • workflow execution by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/6
  • step 4: emission probability matrix from acoustic detections by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/7
  • only parametrize notebooks that have a configuration file by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/8
  • step 5: optimization by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/9
  • small performance optimization for the optimization using optuna by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/10
  • steps 6 and 7: state probabilities and state decoding by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/12
  • fix the implementation of the backwards algorithm by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/13
  • describe the installation process by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/14
  • Add plot notebook by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/15
  • testing copernicus by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/16
  • update variable name and file path, verification with Copernicus OK by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/18
  • Rename path by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/19
  • update path by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/20
  • treat the final probability as a modifier for the emission matrix by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/22
  • update workflow script and add how to use workflow scripts in readme by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/23
  • Adding documentation by @aderrien7 in https://github.com/pangeo-fish/pangeo-fish/pull/21
  • Reorganise conf by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/25
  • bug fix by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/26
  • update default configuration with A18832 by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/27
  • Papermilfix by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/28
  • use deployment_id for acoustic receptor location by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/29
  • Deployment by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/30
  • Enable fish intel tag data analysis to run on datarmor by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/31
  • Fix by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/32
  • change the regridding step to use xarray-healpy by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/33
  • Viterbi by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/34
  • merge the series of workflow notebooks into a single one by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/36
  • move the data wrangling for the catalog into the library by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/37
  • refactor the data cleaning and subtraction by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/39
  • package dependencies by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/42
  • fix_path by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/44
  • make use of the new tag data format by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/53
  • tagging events and time data by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/54
  • get the workflow to work with the changed structure by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/55
  • accept missing acoustic detections by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/57
  • allow choosing the output format for the tracks by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/59
  • recompute the cell ids by default by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/64
  • explicitly specify the chunking on open by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/61
  • allow missing receiver deployment data by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/63
  • add back the additional track quantities by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/62
  • use tag_name instead of trying to pull it out of the metadata by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/66
  • visualization of the results by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/52
  • move all model preparation to open_copernicus_catalog by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/68
  • improve the styling of the animation by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/69
  • fix the combination of emission matrices in the absence of final by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/76
  • command-line script for batch processing of multiple tags by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/70
  • completefullworkflow by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/79
  • remove the deployment-specific parts by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/40
  • Accept s3 by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/81
  • No rotation by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/82
  • take out rotation from example by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/84
  • Fix acoustic chunk save_html by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/85
  • pre-commit hook maintenance by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/90
  • pin xarray-regridding by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/91
  • remove the original estimator implementation by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/92
  • rename the estimator by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/93
  • use zarr to perform the propagation by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/88
  • allow using the CachedEstimator in the cli by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/94
  • patch xarray-healpy renaming issue by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/99
  • Update wrapper for calling scipy by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/101
  • Pr 95 by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/104
  • pass float values to the scipy optimizer by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/106
  • Coastal variability by @tinaok in https://github.com/pangeo-fish/pangeo-fish/pull/100
  • cast the returned score to float by @capetienne in https://github.com/pangeo-fish/pangeo-fish/pull/116
  • Update dependencies by @yellowcap in https://github.com/pangeo-fish/pangeo-fish/pull/107
  • properly determine the model range from the tag data by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/118
  • Catching up #112: warnings in case of missing receivers by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/120
  • Catching up #111: new reference model by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/119
  • Warning into Exception in case of missing receivers by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/123
  • Bbox argument in create_frame by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/122
  • Catching up #115: optimizing createmaskedfill_map by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/117
  • pre-commit hook maintenance by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/129
  • Removed datatree import from datatree by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/128
  • Healpix convolution by @capetienne in https://github.com/pangeo-fish/pangeo-fish/pull/127
  • Fixed numpy casting by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/134
  • Rendering images with xr.Dataset.map_blocks() by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/130
  • depend on the released healpix-convolution by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/138
  • create a standard ci workflow by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/141
  • first set of unit tests by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/142
  • second set of tests by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/146
  • Handling missed out predictions during scoring by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/147
  • third set of tests by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/148
  • Helper Functions by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/144
  • Updated CI's requirements. by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/156
  • move xdggs back into the pip section by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/158
  • Documentation by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/143
  • Release workflow by @QuentinMaz in https://github.com/pangeo-fish/pangeo-fish/pull/157
  • fourth set of tests: estimators by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/149
  • follow-up to the repository transfer by @keewis in https://github.com/pangeo-fish/pangeo-fish/pull/162

New Contributors

  • @keewis made their first contribution in https://github.com/pangeo-fish/pangeo-fish/pull/2
  • @aderrien7 made their first contribution in https://github.com/pangeo-fish/pangeo-fish/pull/21
  • @capetienne made their first contribution in https://github.com/pangeo-fish/pangeo-fish/pull/116
  • @yellowcap made their first contribution in https://github.com/pangeo-fish/pangeo-fish/pull/107

Full Changelog: https://github.com/pangeo-fish/pangeo-fish/commits/2025.03.0

- Python
Published by keewis 12 months ago