bacteria_analyzer
Interactive program for handling data related to growth rates of different bacteria at different temperatures.
Science Score: 44.0%
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Low similarity (8.0%) to scientific vocabulary
Keywords
Repository
Interactive program for handling data related to growth rates of different bacteria at different temperatures.
Basic Info
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Metadata Files
README.md
Bacteria analyzer
This is an interactive program for handling data related to growth rates of different bacteria at different temperatures.
Instructions
To run bacteria_analyzer download Anaconda, download all the program files in one folder and run the main script in Spyder to interact with the program on the console.
Created with:
Python 3.6.6
Spyder 3.3.2
Anaconda
IPython 7.1.1
Numpy
Matplotlib
test.txt
See test.txt to see an example of the data that the program handles.
Each line in the test.txt file consists of the following fields: * Temperature. * Growth rate. * Bacteria.
Bacteria
The bacteria field is a numeric code that correspond to one of the following bacteria names: * 1 = Salmonella enterica. * 2 = Bacillus cereus. * 3 = Listeria. * 4 = Brochothrix thermosphacta.
Example plots
LICENSE
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License.
Owner
- Name: Karen Loaiza (KLOC)
- Login: kalilamali
- Kind: user
- Location: Denmark
- Company: Statens Serum Institut
- Website: https://www.linkedin.com/in/karen-loaiza/
- Twitter: kalilamali
- Repositories: 30
- Profile: https://github.com/kalilamali
🧬👩🏻💻📊 Bioinformatician working on bacterial genomics at @SSI_dk
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Loaiza
given-names: Karen
orcid: https://orcid.org/0000-0002-4282-1152
title: "Bacteria analyzer."
version: 1.0
date-released: 2022-02-01
repository-code: https://github.com/kalilamali/bacteria_analyzer