The UCSCXenaTools R package - Release 1.6.0

Scientific Software - Peer-reviewed - R
Published by ShixiangWang about 1 year ago

The UCSCXenaTools R package - Release 1.4.8

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 2 years ago

The UCSCXenaTools R package - Release v1.4.4

• Fixed the download bug because UCSCXenaShiny mutate the result of XenaQuery() and thus change the column order. This bug will not affect XenaTools itself.

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 4 years ago

The UCSCXenaTools R package - Release v1.4.3

Implemented using hiplot for fetch() functions.

Scientific Software - Peer-reviewed - R
Published by ShixiangWang almost 5 years ago

The UCSCXenaTools R package - Release v1.4.2

UCSCXenaTools 1.4.1 (1.4.2)

• Removed unpublished Xena hub TDI.

UCSCXenaTools 1.4.0

• Supported downloading data from Hiplot mirror site https://xena.hiplot.com.cn/.

Scientific Software - Peer-reviewed - R
Published by ShixiangWang almost 5 years ago

The UCSCXenaTools R package - Release v1.3.6

• Fixed a bug about try times for data download.
• Make sure a message instead of an error will be returned if download process failed.

Scientific Software - Peer-reviewed - R
Published by ShixiangWang about 5 years ago

The UCSCXenaTools R package - Release v1.3.5

Scientific Software - Peer-reviewed - R
Published by ShixiangWang about 5 years ago

The UCSCXenaTools R package - v1.3.3

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 5 years ago

The UCSCXenaTools R package - v1.2.9

Bug fixes

• Removed fetch() check
• Addressed #16, #17, #18

Scientific Software - Peer-reviewed - R
Published by ShixiangWang about 6 years ago

The UCSCXenaTools R package - v1.2.8

v1.2.8

Bug fixes

• #14 fixed
• #15 fixed

v1.2.7

Changes

• XenaDataUpdate is written, it is quicker and more efficient
• Vignette updated for "resume from breakpoint"
• About 100 new datasets added
• Single cell hub url updated

Bug fixes

• #12 fixed
• #13 fixed
• #3 fixed

Scientific Software - Peer-reviewed - R
Published by ShixiangWang about 6 years ago

The UCSCXenaTools R package - v1.2.6

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 6 years ago

The UCSCXenaTools R package - JOSS submitted version

• added Zenodo DOI
• updated code meta information

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 6 years ago

The UCSCXenaTools R package - Version 1.2.5 (accepted by rOpenSci)

Changes

• moved the project to ropensci https://github.com/ropensci/UCSCXenaTools
• updated author list
• updated README, vignette and code according to review comments from Christine Stawitz, detail at https://github.com/ropensci/software-review/issues/315
• moved some packages to suggests
• splitted workflow.R into multiple files

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 6 years ago

The UCSCXenaTools R package - v1.2.2

New features

• added 3 fetch_*() functions

Bug fixes

• fixed #5: API function for querying single gene or sample does not work

Minor changes

• updated website and documentation
• moved vignettes to https://shixiangwang.github.io/home/en/tools/#ucscxenatools

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 6 years ago

The UCSCXenaTools R package - v1.2.1

Bug fixes

• fix API functions cannot be called from outside

New features

• Add option to XenaDownload function for downloading gene id mapping data
• Add XenaQueryProbeMap() for querying probemap of datasets.

Minor changes

• export XenaHub Class
• improve XenaQuery function
• update website and documentation

Scientific Software - Peer-reviewed - R
Published by ShixiangWang over 6 years ago