arise-metabarcoding-biodiversity
ARISE metabarcoding
https://github.com/naturalis/arise-metabarcoding-biodiversity
Science Score: 57.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
○Academic publication links
-
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (5.9%) to scientific vocabulary
Keywords
arise
hpc
metabarcoding
r
Last synced: 4 months ago
·
JSON representation
·
Repository
ARISE metabarcoding
Basic Info
- Host: GitHub
- Owner: naturalis
- License: mit
- Language: R
- Default Branch: main
- Homepage: https://naturalis.github.io/arise-metabarcoding-biodiversity/
- Size: 34.8 MB
Statistics
- Stars: 0
- Watchers: 9
- Forks: 0
- Open Issues: 0
- Releases: 1
Topics
arise
hpc
metabarcoding
r
Created over 3 years ago
· Last pushed about 2 years ago
Metadata Files
Readme
License
Citation
README.md
Analyzing Illumina NovaSeq data using dada2
This repository contains code and documentation for performing dada2 analyses on Illumina NovaSeq data on Naturalis's high-performance computing infrastructure. The repository is laid out following the guidelines of Noble, 2009. The contents are made available under an MIT open source license. The following subsections are here:
- Documentation about configuring the infrastructure, adding users, installing software, and staging the code in this repository.
- Source code with additional scripts for the pipeline.
- Intermediate and result data
- Resulting plots and outputs
Owner
- Name: Naturalis Biodiversity Center
- Login: naturalis
- Kind: organization
- Location: Leiden, the Netherlands
- Website: https://www.naturalis.nl
- Repositories: 79
- Profile: https://github.com/naturalis
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: 't Hoen
given-names: Winny
orcid: https://orcid.org/1234-5678-9101-1121?
title: "DADA2 ITS workflow for fungal metabarcoding data"
version: 1
doi: 10.5281/zenodo.?
date-released: 2023-06