crypticphenoimpute
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
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○DOI references
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○Academic publication links
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○Committers with academic emails
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (5.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: daverblair
- License: mit
- Language: Python
- Default Branch: master
- Size: 120 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
CrypticPhenoImpute
This software imputes the cryptic phenotypes inferred in Blair et al. 2020 into arbitrary ICD10-CM/ICD10-UKBB datasets. It is for replication purposes only, and it will not perform de novo model inference. Note, model files are not distributed with the package and must be downloaded on the fly from GitHub. Therefore, imputation may take several minutes as files are downloaded prior to utilization.
Installation
pip install CrypticPhenoImpute
Use
This software is intended to be used from the command line. Please type 'python -m CrypticPhenoImpute -h' into the command line following installation for instructions.
Owner
- Login: daverblair
- Kind: user
- Repositories: 5
- Profile: https://github.com/daverblair
Citation (CITATION.CFF)
cff-version: 1.2.0 message: "If you use this software, please cite it as below." authors: - family-names: "Blair" given-names: "David Randall" orcid: "https://orcid.org/0000-0002-7455-6488" title: "CrypticPhenoImpute: A software package for replicating the cryptic phenotypes described in Blair et al. 2022" version: 0.1.5 doi: 10.5281/zenodo.6459597 date-released: 2022-04-13 url: "https://github.com/daverblair/CrypticPhenoImpute"
GitHub Events
Total
Last Year
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 19
- Total Committers: 1
- Avg Commits per committer: 19.0
- Development Distribution Score (DDS): 0.0
Top Committers
| Name | Commits | |
|---|---|---|
| daverblair | d****r@g****m | 19 |
Issues and Pull Requests
Last synced: 8 months ago
All Time
- Total issues: 0
- Total pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Total issue authors: 0
- Total pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
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Top Labels
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Packages
- Total packages: 1
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Total downloads:
- pypi 10 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 11
- Total maintainers: 1
pypi.org: crypticphenoimpute
Imputes cryptic phenotypes analyzed in Blair et al. into arbitrary clinical datasets.
- Homepage: https://github.com/daverblair/CrypticPhenoImpute
- Documentation: https://crypticphenoimpute.readthedocs.io/
- License: MIT License
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Latest release: 0.1.6
published about 2 years ago
Rankings
Maintainers (1)
Dependencies
- argparse >=1.1
- numpy >=1.19.0
- pandas >=1.0.5
- vlpi *
- wget *
- argparse >=1.1
- numpy >=1.19.0
- pandas >=1.0.5
- vlpi *
- wget *