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eawag

Preparing the scans of several fishes for display

https://github.com/habi/eawag

Science Score: 54.0%

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    CITATION.cff file
    Found CITATION.cff file
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    Academic publication links
    Links to: zenodo.org
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    Scientific vocabulary similarity
    Low similarity (2.8%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Preparing the scans of several fishes for display

Basic Info
  • Host: GitHub
  • Owner: habi
  • Language: Jupyter Notebook
  • Default Branch: main
  • Homepage:
  • Size: 176 MB
Statistics
  • Stars: 1
  • Watchers: 2
  • Forks: 1
  • Open Issues: 0
  • Releases: 2
Created about 5 years ago · Last pushed over 2 years ago
Metadata Files
Readme Citation

README.md

DOI Open in Binder Open in Colab"

EAWAG

We've acquired a lot of tomographic scans of a bunch of cichlids for a collaboration with the Department Fish Ecology and Evolution of the EAWAG and the Aquatic Ecology & Evolution group of the Institute of Ecology and Evolution.

This set of Jupyter notebooks was used to prepare the tomographic scans of those fishes for checking the data, and to prepare them for display and further processing.

Owner

  • Name: David Haberthür
  • Login: habi
  • Kind: user
  • Location: Bern, Switzerland
  • Company: Institute of Anatomy, Unversity of Bern, Switzerland

Working dad, born at 333 ppm. Generic geek and ex-messenger with a PhD in ultrahigh resolution tomography. I love the outdoors, my bikes, swimming & much more.

Citation (CITATION.cff) 

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: >-
  Jupyter notebooks for image processing and data
  analysis of EAWAG Cichlids project
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: David
    family-names: Haberthür
    email: david.haberthuer@unibe.ch
    affiliation: 'University of Bern, Institute of Anatomy'
    orcid: 'https://orcid.org/0000-0003-3388-9187'

GitHub Events

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  • Fork event: 1
Last Year
  • Fork event: 1

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Last synced: over 1 year ago

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Past Year
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Dependencies

environment.yml conda
  • dask-core
  • dask-image
  • dask-labextension
  • imageio
  • jupyterlab
  • k3d
  • matplotlib
  • matplotlib-scalebar
  • numcodecs
  • numpy
  • openpyxl
  • pandas
  • scikit-image
  • scipy
  • seaborn
  • statsmodels
  • tqdm
  • xlrd
  • zarr