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Recent Releases of https://github.com/fermo-metabolomics/fermo

https://github.com/fermo-metabolomics/fermo - v1.0.9

[1.0.9] - 2024-07-24

Fixed

  • Fixed increase of version of fermo_core to 0.4.3

- HTML
Published by mmzdouc over 1 year ago

https://github.com/fermo-metabolomics/fermo - v1.0.8

[1.0.8] - 2024-07-23

Changed

  • Bumped version of fermo_core to 0.4.3

- HTML
Published by mmzdouc over 1 year ago

https://github.com/fermo-metabolomics/fermo - v1.0.7

[1.0.7] - 2024-07-10

Changed (summary [1.0.0] - [1.0.7])

  • Minor improvements to frontend
  • Reworked Example results (omitted feature filtering step)

Fixed (summary [1.0.0] - [1.0.7])

  • Increased upload size limit in Nginx
  • Fixed broken redirects in frontend and notification
  • Fixed broken Plotly rendering for Chrome and Edge browsers

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Published by mmzdouc over 1 year ago

https://github.com/fermo-metabolomics/fermo - v1.0.0

[1.0.0] - 2024-06-16

Changed

  • Full rework of frontend and backend of fermo_gui
  • Use of fermo_core as processing backend
  • [Breaking Change] No compatibility with previous versions of FERMO

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Published by mmzdouc over 1 year ago

https://github.com/fermo-metabolomics/fermo - FERMO v0.8.11

This represents a minor update of FERMO, re-introducing support for macOS, and reworking the documentation.

Added:

  • Re-introduced support for macOS
  • Added startup-script for macOS

Changed:

  • Change in ms2query (version 0.7.3.2)

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Published by mmzdouc almost 3 years ago

https://github.com/fermo-metabolomics/fermo - FERMO v0.8.10

This represents a minor bugfix of FERMO.

Fixed:

  • Bugfix of modify_feature_info_df() in dashboard_functions.py

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Published by mmzdouc about 3 years ago

https://github.com/fermo-metabolomics/fermo - FERMO v0.8.9

This represents a minor update of FERMO, fixing a dependency problem during installation and introducing some quality-of-life changes.

Note to users of previous versions: it is now required to install FERMO via pip install -e . before starting it via python src/fermo/app.py.

Added:

  • Tracking of changes with CHANGELOG.md

Changed:

  • Changed relative module import paths to absolute ones, making installation of tool via pip install -e . mandatory

Fixed:

  • Bugfix by modifying requirements.txt: specifying package matchmsextras==0.3.0

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Published by mmzdouc about 3 years ago

https://github.com/fermo-metabolomics/fermo - FERMO v0.8.8

This represents a minor update of FERMO, with some additions and quality-of-life improvements.

Added: - Expanded adduct detection functionality - FERMO now also recognizes [M+NH4]+, [M+K]+, [M+H2O+H]+, [M-H2O+H]+(0.8.8.3)

Changed: - Rework of fold-change filter on dashboard page (0.8.8.1) - Changed handling of webbrowser opening (0.8.8.2)

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Published by mmzdouc about 3 years ago

https://github.com/fermo-metabolomics/fermo - FERMO v0.8.7

This represents a minor update of FERMO, mainly concerning the repository structure and the alignment towards contemporary coding conventions.

Note to users of previous versions: due to changes in the repository folder structure, the command to manually start FERMO has changed to python src/fermo/app.py. See the README for details.

Added:

  • Installation via pip install . using pyproject.toml
  • Centralization of dependency metadata in requirements.txt
  • Bibliographic information using CITATION.cff
  • Initialization of testing via pytest package
  • Coverage of calculate_feature_overlap.py with unit tests
  • Build testing with GitHub actions workflow .github/workflows/CI_build.yml

Changed:

  • Changed directory structure: moved source code to src/fermo/...
  • Rewrite of calculate_feature_overlap.py to allow for testing and increase maintainability

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Published by mmzdouc about 3 years ago