https://github.com/fertiglab/rnaforecaster.jl

Science Score: 10.0%

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Host: GitHub
Owner: FertigLab
License: other
Default Branch: main
Size: 1.19 MB

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Fork of rossinerbe/RNAForecaster.jl

Created over 3 years ago · Last pushed over 3 years ago

https://github.com/FertigLab/RNAForecaster.jl/blob/main/

# RNAForecaster.jl - Estimating Future Expression States on Short Time Scales

RNAForecaster is based on a neural network that is trained using ordinary differential equations solvers (neural ODEs). See https://arxiv.org/abs/1806.07366
for details on neural ODEs. The goal of this method is to forecast future expression levels in a cell given transcriptomic data from said cell over short to
intermediate time periods.

- **Documentation**: [![][docs-latest-img]][docs-latest-url]

[docs-latest-img]: https://img.shields.io/badge/docs-dev-blue.svg
[docs-latest-url]: https://rossinerbe.github.io/RNAForecaster.jl/dev/

# Installation
Download [Julia 1.6 or later](https://julialang.org/), if you haven't already.

You can add RNAForecaster from using Julia's package manager, by typing `] add RNAForecaster` or `] add https://github.com/rossinerbe/RNAForecaster.jl` in the Julia prompt.

Owner

Name: FertigLab
Login: FertigLab
Kind: organization
Email: ejfertig@jhmi.edu

Repositories: 68
Profile: https://github.com/FertigLab

Software projects in computational biology and bioinformatics in Elana Fertig's lab in Oncology Biostatistics and Bioinformatics at JHMI

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