https://github.com/fgcz/bfabricpy
API and commad line tools for b-fabric
Science Score: 49.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 7 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
3 of 16 committers (18.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.2%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
API and commad line tools for b-fabric
Basic Info
- Host: GitHub
- Owner: fgcz
- License: gpl-3.0
- Language: Python
- Default Branch: main
- Homepage: https://fgcz.github.io/bfabricPy/
- Size: 7.9 MB
Statistics
- Stars: 6
- Watchers: 6
- Forks: 2
- Open Issues: 22
- Releases: 83
Topics
Metadata Files
README.md
bfabricPy
Documentation
| Package | Link | Change Log | | ------------------ | -------------------------------------------------------------------- | ------------------------------------------------------------------------------------------------------------------------ | | bfabric | https://fgcz.github.io/bfabricPy | bfabric/docs/changelog.md | | bfabric-scripts | https://fgcz.github.io/bfabricPy | bfabric_scripts/docs/changelog.md | | bfabric-app-runner | https://fgcz.github.io/bfabricPy/app_runner/ | bfabricapprunner/docs/changelog.md |
Introduction
This package implements a Python interface to the B-Fabric system. Several pieces of functionality are available:
- Python API:
- General client for all B-Fabric web service operations (CRUD) and configuration management.
- A relational API for low-boilerplate read access to the B-Fabric system.
- Scripts: Several scripts we use more or less frequently to interact with the system.
- A REST API: A REST API to interact with the B-Fabric system. This allows us to interact with B-Fabric from R using bfabricShiny.
Howto cite?
Panse, Christian, Trachsel, Christian and Türker, Can. "Bridging data management platforms and visualization tools to enable ad-hoc and smart analytics in life sciences" Journal of Integrative Bioinformatics, 2022, pp. 20220031. doi: 10.1515/jib-2022-0031.
Owner
- Name: Functional Genomics Center UZH|ETH Zurich
- Login: fgcz
- Kind: organization
- Email: protinf@fgcz.ethz.ch
- Location: Switzerland
- Website: https://fgcz.ch
- Repositories: 10
- Profile: https://github.com/fgcz
proteome informatics FGCZ
GitHub Events
Total
- Create event: 135
- Issues event: 55
- Release event: 53
- Watch event: 2
- Delete event: 74
- Member event: 1
- Issue comment event: 69
- Push event: 768
- Pull request review comment event: 11
- Pull request review event: 23
- Pull request event: 207
- Fork event: 1
Last Year
- Create event: 135
- Issues event: 55
- Release event: 53
- Watch event: 2
- Delete event: 74
- Member event: 1
- Issue comment event: 69
- Push event: 768
- Pull request review comment event: 11
- Pull request review event: 23
- Pull request event: 207
- Fork event: 1
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Leonardo Schwarz | l****z@f****h | 777 |
| Christian Panse | cp@f****h | 267 |
| Christian Panse | c****e@u****m | 105 |
| Leonardo Schwarz | l****z@u****m | 90 |
| Maria dErrico | m****o@f****h | 80 |
| Aleksejs Fomins | a****s@f****h | 44 |
| Aleksejs Fomins | 2****s@u****m | 23 |
| Maria d'Errico | m****o@u****h | 16 |
| mariaderrico | m****a@n****g | 7 |
| Witold Wolski | w****i@g****m | 7 |
| dependabot[bot] | 4****]@u****m | 6 |
| Maria d'Errico | 6****o@u****m | 5 |
| Aleksejs Fomins | a****s@F****l | 1 |
| Christian Panse | cp@l****x | 1 |
| Maria | m****a@M****n | 1 |
| unknown | a****r@f****h | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 5 months ago
All Time
- Total issues: 93
- Total pull requests: 299
- Average time to close issues: about 1 year
- Average time to close pull requests: 14 days
- Total issue authors: 6
- Total pull request authors: 7
- Average comments per issue: 1.16
- Average comments per pull request: 0.31
- Merged pull requests: 250
- Bot issues: 0
- Bot pull requests: 8
Past Year
- Issues: 40
- Pull requests: 219
- Average time to close issues: about 1 month
- Average time to close pull requests: 2 days
- Issue authors: 1
- Pull request authors: 3
- Average comments per issue: 0.25
- Average comments per pull request: 0.23
- Merged pull requests: 183
- Bot issues: 0
- Bot pull requests: 5
Top Authors
Issue Authors
- leoschwarz (43)
- cpanse (37)
- CodingKaiser (7)
- wolski (3)
- mariaderrico (2)
- tobiasko (1)
Pull Request Authors
- leoschwarz (273)
- dependabot[bot] (8)
- cpanse (7)
- aleksejs-fomins (7)
- wolski (2)
- Copilot (1)
- mariaderrico (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 772 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 18
- Total maintainers: 1
pypi.org: bfabric
Python client for the B-Fabric API
- Homepage: https://github.com/fgcz/bfabricPy
- Documentation: https://bfabric.readthedocs.io/
- License: GPL-3.0
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Latest release: 1.13.35
published 5 months ago
Rankings
Maintainers (1)
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- Flask ==2.2.3
- PyYAML >=3.11
- slugify *
- suds-py3 >=1.4.1