https://github.com/fgcz/biobeamer

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Academic email domains
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (7.4%) to scientific vocabulary

Last synced: 5 months ago · JSON representation

Repository

Basic Info

Host: GitHub
Owner: fgcz
Language: Python
Default Branch: p37
Size: 5.62 MB

Statistics

Stars: 5
Watchers: 3
Forks: 3
Open Issues: 5
Releases: 0

Created about 11 years ago · Last pushed 5 months ago

Metadata Files

Readme

README.md

Collecting instrument data using BioBeamer

Install

ensure you have python 2.7.*
pip install PyFGCZ
git clone git@github.com:fgcz/BioBeamer.git

Configure

BioBeamer xml configuration file

```xml

<?xml-stylesheet type="text/xsl" href="BioBeamer.xsl"?> 93

```

the xml can be validated using bash xmllint --noout --schema BioBeamer.xsd BioBeamer.xml or bash xmlstarlet val --xsd BioBeamer.xsd BioBeamer.xml

Deploy @ new location

change syslog host
change configuration url

Configure Syslog '/etc/rsyslog.conf'

```syslog $template tplremote,"%timegenerated% %HOSTNAME% %fromhost-ip% %syslogtag%%msg:::drop-last-lf%\n" $template RemoteHost,"/var/log/remote/%HOSTNAME%_%fromhost-ip%.log"

if ($fromhost-ip != '127.0.0.1') then ?RemoteHost;tplremote
& ~ ```

Configure logrotate '/etc/logrotate.d/remote'

conf /var/log/remote/* { rotate 13 monthly missingok notifempty compress }

Run

@ FGCZ

just 'run as administrator' justBeamFiles.exe.

justBeamFiles.exe is an autoitscript. In our case the justBeamFiles.exe maps the storage and runs the fgcz_biobeamer.py script which uses robocopy.exe on Micorsoft installed PCs to sync the files.

otherwise

ensure that SAN is mounted cmd python BioBeamer.py

BioBeamer class

BioBeamer UML

Author

Christian Panse :rocket:

TODO

munin plugin

Owner

Name: Functional Genomics Center UZH|ETH Zurich
Login: fgcz
Kind: organization
Email: protinf@fgcz.ethz.ch
Location: Switzerland

Website: https://fgcz.ch
Repositories: 10
Profile: https://github.com/fgcz

proteome informatics FGCZ

GitHub Events

Total

Issues event: 13
Watch event: 1
Delete event: 1
Issue comment event: 7
Push event: 36
Pull request event: 1
Create event: 2

Last Year

Issues event: 13
Watch event: 1
Delete event: 1
Issue comment event: 7
Push event: 36
Pull request event: 1
Create event: 2

Issues and Pull Requests

Last synced: 5 months ago

All Time

Total issues: 14
Total pull requests: 1
Average time to close issues: 3 months
Average time to close pull requests: about 4 hours
Total issue authors: 3
Total pull request authors: 1
Average comments per issue: 0.93
Average comments per pull request: 1.0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 11
Pull requests: 0
Average time to close issues: 29 days
Average time to close pull requests: N/A
Issue authors: 2
Pull request authors: 0
Average comments per issue: 1.18
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0