cd19_splicing_mutagenesis
Cortés-López, Schulz, Enculescu et al. script repository
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (2.1%) to scientific vocabulary
Last synced: 6 months ago
·
JSON representation
·
Repository
Cortés-López, Schulz, Enculescu et al. script repository
Basic Info
- Host: GitHub
- Owner: mcortes-lopez
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.81 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Created over 4 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
Citation
README.md
CD19 high-throughput mutagenesis
Repository with the analysis of the paper:
High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance
by Cortés-López, Schulz, Enculescu et al.
Preprint: doi.org/10.1101/2021.10.08.463671
This repository:
List of analyses and links to corresponding folder:
- Orlando et al Isoform re-analysis
- DNA Demultiplexing
- Variant calling
- RNA Demultiplexing
- Cryptic isoforms
- MaxEnt analysis
- SpliceAI analysis
- DeepRipe analysis
- Other RBP analysis
- External variants collection
Most of the analyses require the CD19 exon 1-3 minigene annotation:
Owner
- Name: Mariela Cortés López
- Login: mcortes-lopez
- Kind: user
- Location: New York
- Company: NYGC & WCM
- Website: https://mcortes-lopez.netlify.app/
- Twitter: alt_spliced
- Repositories: 1
- Profile: https://github.com/mcortes-lopez
Postdoctoral Associate - Landau Lab
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Cortés-López"
given-names: "Mariela"
orcid: "https://orcid.org/0000-0002-8951-4811"
title: "CD19 exon 2 splicing mutagenesis"
version: 1.0.0
doi: 10.5281/zenodo.6614455
date-released: 2022-06-05
url: "https://github.com/mcortes-lopez/CD19_splicing_mutagenesis"
preferred-citation:
type: article
authors:
- family-names: "Cortés-López"
given-names: "Mariela"
orcid: "https://orcid.org/0000-0002-8951-4811"
- family-names: "Schulz"
given-names: "Laura"
- family-names: "Enculescu"
given-names: "Mihaela"
doi: "10.1101/2021.10.08.463671"
journal: "BioRxiv"
month: 10
title: "High-throughput mutagenesis identifies mutations and RNA-binding proteins controlling CD19 splicing and CART-19 therapy resistance"
year: 2021