anesthetic - v2.10.3

What's Changed

• Float tidy for contour by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/402

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.10.2...v2.10.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 7 months ago

anesthetic - v2.10.2

What's Changed

• Only align labels of axes within the 2d axes by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/405

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.10.1...v2.10.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 8 months ago

anesthetic - v2.10.1

What's Changed

• pandas 2.3 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/406

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.10.0...v2.10.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 8 months ago

anesthetic - v2.10.0

What's Changed

• Add BlackJAX reader and refine logL_birth handling for np.nan by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/401

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.9.3...v2.10.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 9 months ago

anesthetic - v2.9.3

What's Changed

• Updating the read_csv() function for reading BytesIO by @DilyOng in https://github.com/handley-lab/anesthetic/pull/399

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.9.2...v2.9.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] 12 months ago

anesthetic - v2.9.2

What's Changed

• matplotlib 3.10 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/398

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.9.1...v2.9.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 1 year ago

anesthetic - v2.9.1

What's Changed

• numpy 2.0 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/388

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.9.0...v2.9.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.9.0

What's Changed

• Normalised stats by @lukashergt in https://github.com/handley-lab/anesthetic/pull/396

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.16...v2.9.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.8.16

What's Changed

• stop warning when logL==logL_birth==-inf by @lukashergt in https://github.com/handley-lab/anesthetic/pull/395

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.15...v2.8.16

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.8.15

What's Changed

• add code coverage to "minimum-dependencies" check in CI by @lukashergt in https://github.com/handley-lab/anesthetic/pull/397

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.14...v2.8.15

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.8.14

What's Changed

• Restrict scipy and numpy versions by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/390

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.13...v2.8.14

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.8.13

What's Changed

• allow matplotlib 3.9 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/387

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.12...v2.8.13

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 1 year ago

anesthetic - v2.8.12

What's Changed

• Fix to color='C2' plot_2d error post pandas 2 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/382

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.11...v2.8.12

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.11

What's Changed

• Fix macOS CI by @lukashergt in https://github.com/handley-lab/anesthetic/pull/385

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.10...v2.8.11

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.10

What's Changed

• Fix logscale limit updates by @lukashergt in https://github.com/handley-lab/anesthetic/pull/383

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.9...v2.8.10

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.9

What's Changed

• Fix for logL_birth by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/324

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.8...v2.8.9

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.8

What's Changed

• Conda install by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/378

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.7...v2.8.8

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.7

What's Changed

• Fixing to minimum version of pytables to try to remove illegal instruction error by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/379

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.6...v2.8.7

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.6

What's Changed

• update the python version number for readthedocs from 3.8 to 3.11 by @lukashergt in https://github.com/handley-lab/anesthetic/pull/376

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.5...v2.8.6

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.5

What's Changed

• CodeCov v4 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/377

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.4...v2.8.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.4

What's Changed

• 2 tick minimum also for logscale by @lukashergt in https://github.com/handley-lab/anesthetic/pull/372

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.3...v2.8.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.3

What's Changed

• Clean up temporary files by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/374

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.2...v2.8.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.2

What's Changed

• Pandas 2.2.0 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/359

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.1...v2.8.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.1

What's Changed

• restrict pandas and matplotlib versions for conda CI by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/369

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.8.0...v2.8.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.8.0

What's Changed

• Reading from csv files by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/364

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.7.3...v2.8.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.7.3

What's Changed

• Cast root to str to allow e.g. a pathlib.Path object to be used by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/358

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.7.2...v2.7.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.7.2

What's Changed

• Fix ./bin/bump version.py on macOS by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/356

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.7.1...v2.7.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.7.1

What's Changed

• Update actions for Node.js 16 deprecation by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/361

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.7.0...v2.7.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] almost 2 years ago

anesthetic - v2.7.0

What's Changed

• Made a new branch called logLmax with the updated anesthetic.examples… by @DilyOng in https://github.com/handley-lab/anesthetic/pull/348

New Contributors

• @DilyOng made their first contribution in https://github.com/handley-lab/anesthetic/pull/348

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.6.0...v2.7.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] about 2 years ago

anesthetic - v2.6.0

What's Changed

• Dead points and Truncation by @yallup in https://github.com/handley-lab/anesthetic/pull/354

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.5.2...v2.6.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.5.2

What's Changed

• Fastkde2 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/352

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.5.1...v2.5.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.5.1

What's Changed

• boolean ncompress in kde_contour_plot_2d by @lukashergt in https://github.com/handley-lab/anesthetic/pull/350

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.5.0...v2.5.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.5.0

What's Changed

• implement axes logscales by @lukashergt in https://github.com/handley-lab/anesthetic/pull/328

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.4.2...v2.5.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.4.2

What's Changed

• Test latest dependencies by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/344

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.4.1...v2.4.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.4.1

What's Changed

• Changes for matplotlib3.8 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/339

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.4.0...v2.4.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.4.0

What's Changed

• Fix Cholesky computation for Gelman--Rubin statistic and add per-parameter feature by @lukashergt in https://github.com/handley-lab/anesthetic/pull/345

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.5...v2.4.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.5

What's Changed

• Changes for pandas 2.1 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/335

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.4...v2.3.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.4

What's Changed

• Ignore "You are using [hist/kde] as a plot kind" warnings by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/342

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.3...v2.3.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.3

What's Changed

• Restrict matplotlib < 3.8 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/341

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.2...v2.3.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.2

What's Changed

• add read.nestedfit and read.ultranest to docs by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/338

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.1...v2.3.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.1

What's Changed

• restrict to pandas2.0 by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/337

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.3.0...v2.3.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.3.0

What's Changed

• Automatic bin computation for weighted data by @lukashergt in https://github.com/handley-lab/anesthetic/pull/330

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.2.1...v2.3.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.2.1

What's Changed

• Fix failing docs by @lukashergt in https://github.com/handley-lab/anesthetic/pull/331

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.2.0...v2.2.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.2.0

What's Changed

• compatibility with nested_fit output files by @martinit18 in https://github.com/handley-lab/anesthetic/pull/327

New Contributors

• @martinit18 made their first contribution in https://github.com/handley-lab/anesthetic/pull/327

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.5...v2.2.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.5

What's Changed

• Test suite tidy by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/319

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.4...v2.1.5

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.4

What's Changed

• Flake8 update fix by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/323

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.3...v2.1.4

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.3

What's Changed

• Add specific docs for the GUI by @lukashergt in https://github.com/handley-lab/anesthetic/pull/315

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.2...v2.1.3

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.2

What's Changed

• minor bug fixes by @lukashergt in https://github.com/handley-lab/anesthetic/pull/314

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.1...v2.1.2

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.1

What's Changed

• Test for integer axes creation by @yallup in https://github.com/handley-lab/anesthetic/pull/322

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.1.0...v2.1.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.1.0

What's Changed

• add ultranest import by @JohannesBuchner in https://github.com/handley-lab/anesthetic/pull/313

New Contributors

• @JohannesBuchner made their first contribution in https://github.com/handley-lab/anesthetic/pull/313

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.1...v2.1.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.1

What's Changed

• remove test_hdf5.h5 after test by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/309

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0...v2.0.1

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0

What's Changed

• Pandas 1.1 update by @lukashergt in https://github.com/handley-lab/anesthetic/pull/115
• nlive calculation bug fix by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/119
• logzero masking at prior and likelihood level by @lukashergt in https://github.com/handley-lab/anesthetic/pull/120
• add importance_sample method to NestedSamples and MCMCSamples by @lukashergt in https://github.com/handley-lab/anesthetic/pull/122
• importance_sample with inplace=False by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/126
• skipna functionality for WeightedDataFrame means and (co)variances by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/121
• Added prior and prior_points shortcuts by @EthanCarragher in https://github.com/handley-lab/anesthetic/pull/130
• Create CI.yml by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/138
• Missing weighted functions added to WeightedPandas by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/127
• fix MCMCSamples.importance_sample by @lukashergt in https://github.com/handley-lab/anesthetic/pull/139
• Removal of Python2-compatibility requirements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/123
• Function to merge data sets with weights by @Stefan-Heimersheim in https://github.com/handley-lab/anesthetic/pull/136
• 1d Confidence Regions by @htjb in https://github.com/handley-lab/anesthetic/pull/145
• Minor CI improvements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/144
• bugfix for xlim for fastkde plots by @lukashergt in https://github.com/handley-lab/anesthetic/pull/150
• GUI tests quick fix due to matplotlib 3.4 API change by @lukashergt in https://github.com/handley-lab/anesthetic/pull/154
• change default edgecolor: match facecolor by @lukashergt in https://github.com/handley-lab/anesthetic/pull/152
• vmin=0 in 2d histograms by @lukashergt in https://github.com/handley-lab/anesthetic/pull/157
• optional normalisation by area instead of by maximum by @lukashergt in https://github.com/handley-lab/anesthetic/pull/155
• Change in behaviour from RuntimeError to RuntimeWarning for invalid nested sampling runs by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/159
• auto update limits of derived parameters by @lukashergt in https://github.com/handley-lab/anesthetic/pull/166
• Upgrade to quantile function arising from pandas 1.3.0 internals change by @lukashergt in https://github.com/handley-lab/anesthetic/pull/170
• Equally weighted live points by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/162
• axlines method to highlight specific parameter values across all subplots by @lukashergt in https://github.com/handley-lab/anesthetic/pull/168
• add reader for Cobaya's MCMC chains (requires GetDist) by @lukashergt in https://github.com/handley-lab/anesthetic/pull/167
• Inner ticks by @lukashergt in https://github.com/handley-lab/anesthetic/pull/153
• Order contour levels from outermost to innermost by @lukashergt in https://github.com/handley-lab/anesthetic/pull/173
• Fix for plotting with integer labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/163
• fix axlines and axspans for axes with upper=False by @lukashergt in https://github.com/handley-lab/anesthetic/pull/175
• patch for getdistreader by @lukashergt in https://github.com/handley-lab/anesthetic/pull/172
• Copy tex and optionally set label when merging samples by @Stefan-Heimersheim in https://github.com/handley-lab/anesthetic/pull/177
• adapt to breaking chanes in matplotlib API version 3.5.0 by @lukashergt in https://github.com/handley-lab/anesthetic/pull/184
• Fixing unexpected behaviour associated with reset_index by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/185
• Fix for unsorted logL construction bug by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/187
• Fix #189, mergesamplesweighted breaking triangularsamplecompression_2d by @Stefan-Heimersheim in https://github.com/handley-lab/anesthetic/pull/191
• Allow NestedSamples to take lists as well as numpy arrays as constructors by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/190
• Fix to (near) empty phys_live-birth.txt file reading by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/186
• Updated for most recent PEP compliant assert statements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/195
• Check for NaNs in logL by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/192
• Manual setting of the bandwidth by @lukashergt in https://github.com/handley-lab/anesthetic/pull/193
• Quick fix c/=c[-1] to c=c/c[-1] by @lukashergt in https://github.com/handley-lab/anesthetic/pull/206
• WeightedDataFrame plotting by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/194
• MCMC plotting by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/207
• create parent class Samples for child classes MCMCSamples and NestedSamples by @lukashergt in https://github.com/handley-lab/anesthetic/pull/209
• remove limits attribute and xmin and xmax kwargs by @lukashergt in https://github.com/handley-lab/anesthetic/pull/212
• Issue with plot labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/218
• WeightedPandas index improvements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/198
• Change to reading system by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/217
• 100% coverage by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/221
• logZ(beta) functionality and logX function by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/210
• Have separate ncompress and nplot by @lukashergt in https://github.com/handley-lab/anesthetic/pull/216
• tex labels in MultiIndex columns by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/215
• update gui script by @yallup in https://github.com/handley-lab/anesthetic/pull/228
• Fix for filenames which contain regular expressions by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/231
• Fixes for dropping weights and labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/230
• fixes for pandas 1.5.0 and matplotlib 3.6.0 updates by @lukashergt in https://github.com/handley-lab/anesthetic/pull/238
• Fix warnings shown with pytest by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/234
• Change figure and axes output handling by @lukashergt in https://github.com/handley-lab/anesthetic/pull/224
• Updated .readthedocs.yml to be python 3.8 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/247
• reduce CI workflow matrices by @lukashergt in https://github.com/handley-lab/anesthetic/pull/249
• pass labels argument through when reading chains by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/232
• Fix to non-deterministic behaviour by removing long-range side effects by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/248
• API hints for existing users by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/246
• Perfect nested sampling functionality by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/205
• Close figures on teardown by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/254
• .loc to avoid warnings by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/255
• replace .boxplot()with .plot.box() by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/256
• MCMCSamples methods for burn-in removal and Gelman--Rubin statistic by @lukashergt in https://github.com/handley-lab/anesthetic/pull/258
• Packaging improvements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/259
• matplotlib 3.7.0 moved SubplotBase by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/263
• Improved packaging mark 2 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/262
• Improved packaging mark 3 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/265
• Improved packaging mark 4 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/266
• Update documentation for 2.0 release by @lukashergt in https://github.com/handley-lab/anesthetic/pull/243
• Improved packaging mark 5 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/267
• Improved packaging mark 6 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/269
• Updated matplotlib version requirements by @tobyLovick in https://github.com/handley-lab/anesthetic/pull/268
• add flake8 pre-commit by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/261
• Replace overridden _make_plot() with _plot() by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/235
• Correct script in pyproject.toml + Improved packaging mark 7 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/271
• WeightedGroupBy by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/272
• handley-lab migration by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/279
• rename [extras] optional dependency to [all] by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/281
• Use the scipy version of linalg.cholesky which consistently raises LinAngError with linearly dependent columns by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/287
• Make name of Colormaps returned by basic_cmap a string by @ThomasGesseyJones in https://github.com/handley-lab/anesthetic/pull/289
• Release workflow by @ThomasGesseyJones in https://github.com/handley-lab/anesthetic/pull/291
• pandas2.0 take III: Revenge of the Sith by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/292
• Specify both pandas>=2.0.0 and matplotlib>=3.6.1 for conda CI by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/295
• Effective samples by @htjb in https://github.com/handley-lab/anesthetic/pull/285
• Fix to anesthetic gui by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/293
• Tidy up by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/294
• Warning for deprecated root kwarg by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/298
• fix copy-paste error in samples docs by @lukashergt in https://github.com/handley-lab/anesthetic/pull/301
• Arch Linux AUR deployment by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/299
• Improved packaging mark 8 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/302
• dlogX -> logdX by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/306
• add python 3.11 to workflows by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/305
• Labels fix by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/304
• HDF5 read/write functionality by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/303
• 2.0.0 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/296

New Contributors

• @EthanCarragher made their first contribution in https://github.com/handley-lab/anesthetic/pull/130
• @Stefan-Heimersheim made their first contribution in https://github.com/handley-lab/anesthetic/pull/136
• @htjb made their first contribution in https://github.com/handley-lab/anesthetic/pull/145
• @yallup made their first contribution in https://github.com/handley-lab/anesthetic/pull/228
• @tobyLovick made their first contribution in https://github.com/handley-lab/anesthetic/pull/268
• @ThomasGesseyJones made their first contribution in https://github.com/handley-lab/anesthetic/pull/289

Full Changelog: https://github.com/handley-lab/anesthetic/compare/1.3.6...v2.0.0

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.44

What's Changed

• HDF5 read/write functionality by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/303

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.43...v2.0.0-beta.44

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.43

What's Changed

• Labels fix by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/304

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.42...v2.0.0-beta.43

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.42

What's Changed

• add python 3.11 to workflows by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/305

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.41...v2.0.0-beta.42

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.41

What's Changed

• dlogX -> logdX by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/306

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.40...v2.0.0-beta.41

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.40

What's Changed

• Improved packaging mark 8 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/302

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.39...v2.0.0-beta.40

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.39

What's Changed

• Arch Linux AUR deployment by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/299

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.38...v2.0.0-beta.39

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.38

What's Changed

• fix copy-paste error in samples docs by @lukashergt in https://github.com/handley-lab/anesthetic/pull/301

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.37...v2.0.0-beta.38

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.37

What's Changed

• Warning for deprecated root kwarg by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/298

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.36...v2.0.0-beta.37

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.36

What's Changed

• Tidy up by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/294

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.35...v2.0.0-beta.36

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.35

What's Changed

• Fix to anesthetic gui by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/293

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.34...v2.0.0-beta.35

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.34

What's Changed

• Effective samples by @htjb in https://github.com/handley-lab/anesthetic/pull/285

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.33...v2.0.0-beta.34

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.33

What's Changed

• Specify both pandas>=2.0.0 and matplotlib>=3.6.1 for conda CI by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/295

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.32...v2.0.0-beta.33

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.32

What's Changed

• pandas2.0 take III: Revenge of the Sith by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/292

Full Changelog: https://github.com/handley-lab/anesthetic/compare/v2.0.0-beta.31...v2.0.0-beta.32

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic - v2.0.0-beta.31

What's Changed

• Order contour levels from outermost to innermost by @lukashergt in https://github.com/handley-lab/anesthetic/pull/173
• Fix for plotting with integer labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/163
• fix axlines and axspans for axes with upper=False by @lukashergt in https://github.com/handley-lab/anesthetic/pull/175
• patch for getdistreader by @lukashergt in https://github.com/handley-lab/anesthetic/pull/172
• Copy tex and optionally set label when merging samples by @Stefan-Heimersheim in https://github.com/handley-lab/anesthetic/pull/177
• adapt to breaking chanes in matplotlib API version 3.5.0 by @lukashergt in https://github.com/handley-lab/anesthetic/pull/184
• Fixing unexpected behaviour associated with reset_index by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/185
• Fix for unsorted logL construction bug by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/187
• Fix #189, mergesamplesweighted breaking triangularsamplecompression_2d by @Stefan-Heimersheim in https://github.com/handley-lab/anesthetic/pull/191
• Allow NestedSamples to take lists as well as numpy arrays as constructors by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/190
• Fix to (near) empty phys_live-birth.txt file reading by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/186
• Updated for most recent PEP compliant assert statements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/195
• Check for NaNs in logL by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/192
• Manual setting of the bandwidth by @lukashergt in https://github.com/handley-lab/anesthetic/pull/193
• Quick fix c/=c[-1] to c=c/c[-1] by @lukashergt in https://github.com/handley-lab/anesthetic/pull/206
• WeightedDataFrame plotting by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/194
• MCMC plotting by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/207
• create parent class Samples for child classes MCMCSamples and NestedSamples by @lukashergt in https://github.com/handley-lab/anesthetic/pull/209
• remove limits attribute and xmin and xmax kwargs by @lukashergt in https://github.com/handley-lab/anesthetic/pull/212
• Issue with plot labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/218
• WeightedPandas index improvements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/198
• Change to reading system by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/217
• 100% coverage by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/221
• logZ(beta) functionality and logX function by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/210
• Have separate ncompress and nplot by @lukashergt in https://github.com/handley-lab/anesthetic/pull/216
• tex labels in MultiIndex columns by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/215
• update gui script by @yallup in https://github.com/handley-lab/anesthetic/pull/228
• Fix for filenames which contain regular expressions by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/231
• Fixes for dropping weights and labels by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/230
• fixes for pandas 1.5.0 and matplotlib 3.6.0 updates by @lukashergt in https://github.com/handley-lab/anesthetic/pull/238
• Fix warnings shown with pytest by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/234
• Change figure and axes output handling by @lukashergt in https://github.com/handley-lab/anesthetic/pull/224
• Updated .readthedocs.yml to be python 3.8 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/247
• reduce CI workflow matrices by @lukashergt in https://github.com/handley-lab/anesthetic/pull/249
• pass labels argument through when reading chains by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/232
• Fix to non-deterministic behaviour by removing long-range side effects by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/248
• API hints for existing users by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/246
• Perfect nested sampling functionality by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/205
• Close figures on teardown by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/254
• .loc to avoid warnings by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/255
• replace .boxplot()with .plot.box() by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/256
• MCMCSamples methods for burn-in removal and Gelman--Rubin statistic by @lukashergt in https://github.com/handley-lab/anesthetic/pull/258
• Packaging improvements by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/259
• matplotlib 3.7.0 moved SubplotBase by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/263
• Improved packaging mark 2 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/262
• Improved packaging mark 3 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/265
• Improved packaging mark 4 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/266
• Update documentation for 2.0 release by @lukashergt in https://github.com/handley-lab/anesthetic/pull/243
• Improved packaging mark 5 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/267
• Improved packaging mark 6 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/269
• Updated matplotlib version requirements by @tobyLovick in https://github.com/handley-lab/anesthetic/pull/268
• add flake8 pre-commit by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/261
• Replace overridden _make_plot() with _plot() by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/235
• Correct script in pyproject.toml + Improved packaging mark 7 by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/271
• WeightedGroupBy by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/272
• handley-lab migration by @williamjameshandley in https://github.com/handley-lab/anesthetic/pull/279
• rename [extras] optional dependency to [all] by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/281
• Use the scipy version of linalg.cholesky which consistently raises LinAngError with linearly dependent columns by @AdamOrmondroyd in https://github.com/handley-lab/anesthetic/pull/287
• Make name of Colormaps returned by basic_cmap a string by @ThomasGesseyJones in https://github.com/handley-lab/anesthetic/pull/289
• Release workflow by @ThomasGesseyJones in https://github.com/handley-lab/anesthetic/pull/291

New Contributors

• @yallup made their first contribution in https://github.com/handley-lab/anesthetic/pull/228
• @tobyLovick made their first contribution in https://github.com/handley-lab/anesthetic/pull/268
• @ThomasGesseyJones made their first contribution in https://github.com/handley-lab/anesthetic/pull/289

Full Changelog: https://github.com/handley-lab/anesthetic/compare/2.0.0-beta.9...v2.0.0-beta.31

Scientific Software - Peer-reviewed - Python
Published by github-actions[bot] over 2 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley about 4 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 4 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 5 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley about 5 years ago

anesthetic - Importance sampling

122 #126

• Added an importance sample function which creates valid importance sampled nested sampling run

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic - nlive bug fixes for plateau regions

119

• Fix to nlive computation for a bug that was occurring for plateau regions at the start of the run
• Added a wedding cake example likelihood to demonstrate anesthetic's effectiveness in dealing with plateaus

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic - WeightedDataFrame upgrade

115

• Moved weights in WeightedDataFrame into MultiIndex of nested sampling iteration and weight. This simplifies the implementation, makes weights visible as part of the index and is compatible with past and current version of pandas
• rename weight, w -> weights throughout for compatibility with matplotlib

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic - Last stable version of anesthetic 1

Following the update of pandas to 1.1 and consequent breaking changes outlined in #115, we are now upgrading the API to deal with this and other issues to be resolved in the release of anesthetic 2.0.0. We therefore freeze anesthetic 1, and its dependency on pandas <=1.0.5 in this release

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 5 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 6 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 6 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley about 6 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley about 6 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 6 years ago

anesthetic -

Bug fix for weight slicing.

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 6 years ago

anesthetic - Version 1.2

Updates since version 1.1: - scipy.stats.kde is now the default kernel density estimator - Histogram plots now provided - Improved test examples - General bug fixes and improvements

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 6 years ago

anesthetic - Version 1.1

This brings a host of updates, many provided by @lukashergt, including:

• 1-d histograms
• MontePython reading
• clearer code layout (e.g. scatter plots rather than plots)
• more sensible legend handling
• Better continuous integration
• bug fixes

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley over 6 years ago

anesthetic - Accepted JOSS paper

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Resolves #5

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

First stable release, submitted to JOSS

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago

anesthetic -

Scientific Software - Peer-reviewed - Python
Published by williamjameshandley almost 7 years ago