mavehgvs - mavehgvs 0.6.2

Add py.typed file to enable mypy type checking.

- Python
Published by afrubin over 1 year ago

mavehgvs - mavehgvs 0.6.1

Fixed a bug that caused genomic multi-variants to fail regex validation.

- Python
Published by afrubin over 2 years ago

mavehgvs - mavehgvs 0.6.0

Added support for single-residue delins variants created using the dictionary method.

Made numerous packaging and CI improvements to modernize development.

- Python
Published by afrubin about 3 years ago

mavehgvs - mavehgvs 0.5.0

• Added support for frame shift protein variants
• Improved stringency of target sequence validation for protein variants
• Improved unit test coverage, especially for protein and RNA variants, and multi-variants of all types
• Made several minor updates to the spec and documentation

- Python
Published by afrubin over 3 years ago

mavehgvs - hgvspatterns 0.5.0

This is the final archival release for hgvspatterns before it was replaced by mavehgvs.

- Python
Published by afrubin over 3 years ago

mavehgvs - mavehgvs 0.4.0

Implemented a new type of variant for target equality, rather than treating it as a special case of substitution variants.

This enables support for MITE-seq datasets, which measure target identical variants on a per-position basis.

- Python
Published by afrubin over 4 years ago

mavehgvs - mavehgvs 0.3.1

Fixes a bug when validating a target-identical variant against a target sequence.

- Python
Published by afrubin over 4 years ago

mavehgvs - mavehgvs 0.3.0

Added an equality operator for comparing two variants without casting them as strings first.

- Python
Published by afrubin about 5 years ago

mavehgvs - mavehgvs 0.2.1

Fixes a bug in target sequence validation for protein variants.

- Python
Published by afrubin over 5 years ago

mavehgvs - mavehgvs 0.2.0

Added optional target sequence validation for variants that do not contain extended positions (e.g. splice variants).

Variant objects can now be created from dictionaries containing the right set of key-value pairs. This feature is currently under-documented.

- Python
Published by afrubin over 5 years ago

mavehgvs - mavehgvs 0.1.0

This is the initial release of mavehgvs, the replacement for hgvs-patterns.

This package implements a strict subset of the HGVS standard (see docs) designed for describing data from Multiplexed Assays of Variant Effect.

The package can validate single- and multi-variants and produce variant objects for downstream use. The target sequence validation feature is currently experimental.

- Python
Published by afrubin over 5 years ago