pro-tycheposons
Supplementary code and data for mobile genetic elements in Prochlorococcus
Science Score: 26.0%
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Supplementary code and data for mobile genetic elements in Prochlorococcus
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Created over 7 years ago
· Last pushed almost 2 years ago
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Supplementary code and data for our manuscripts "Novel integrative elements and genomic plasticity in ocean ecosystems" describing Tycheposons - a new class of mobile genetic elements in /Prochlorococcus/ and other marine bacteria that are abundant in marine vesicles and viruses. See - =element-finder/bin= for the scripts to predict the mobile elements in genomic data. - =element-finder/data= for the profiles of signature genes. - =elements-pro= for elements in /Prochlorococcus/. - =elements-gorg-single-cells= for elements in other marine bacteria. - =elements-tara-viral= for elements found in Tara Oceans viral-fraction metagenome assemblies. - =data-pro= for reference-scaffolded and annotated /Prochlorococcus/ genomes and a phylogenetic tree. - =MIT0604-nanopore= for the nanopore assemblies of /Prochlorococcus/ strain MIT0604 containing copies of a mobile element carrying a nitrate assimilation gene cluster. - =rnaseq-pro= for differential gene expression analysis of /Prochlorococcus/ with focus on element response - =YR-phylogeny= for sequences, alignment and phylogenetic tree of tyrosine recombinases. - =vesicles-abundance= for differential abundance analysis of element hallmark genes in vesicles
Owner
- Name: Thomas Hackl
- Login: thackl
- Kind: user
- Location: Groningen, Netherlands
- Company: Max Planck Institute for Medical Research
- Website: https://thackl.github.io
- Repositories: 23
- Profile: https://github.com/thackl