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rGUIDANCE – alignment confidence score computation in R

rGUIDANCE – alignment confidence score computation in R - Published in JOSS (2019)

https://github.com/franzkrah/rguidance

Science Score: 93.0%

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    CITATION.cff file
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    Found .zenodo.json file
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    DOI references
    Found 4 DOI reference(s) in README and JOSS metadata
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    Academic publication links
    Links to: joss.theoj.org
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    JOSS paper metadata
    Published in Journal of Open Source Software
Last synced: 6 months ago · JSON representation

Repository

rGUIDANCE – alignment confidence score computation in R

Basic Info
  • Host: GitHub
  • Owner: FranzKrah
  • License: gpl-3.0
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 1.91 MB
Statistics
  • Stars: 2
  • Watchers: 2
  • Forks: 0
  • Open Issues: 3
  • Releases: 9
Created about 7 years ago · Last pushed about 2 years ago
Metadata Files
Readme License

README.md

rGUIDANCE

Multiple sequence alignment reliability scores

You can install this R package by using devtools as follows:

r install.packages("devtools") devtools::install_github("FranzKrah/rGUIDANCE") and then use it by typing ...

r library("rGUIDANCE")

Example usage: Phylogeny pipeline

Vignette: Phylogeny pipeline

Paper

DOI

MAFFT

https://mafft.cbrc.jp/alignment/software/macosx.html

GUIDANCE source

https://github.com/anzaika/guidance

Owner

  • Name: Franz Krah
  • Login: FranzKrah
  • Kind: user
  • Location: Freising, Germany
  • Company: Technical University of Munich

Data Science in Life Science in South Germany

JOSS Publication

rGUIDANCE – alignment confidence score computation in R
Published
April 30, 2019
DOI
Volume 4, Issue 36, Page 1350
Authors
Franz-Sebastian Krah ORCID
Plant Biodiversity Research Group, Department of Ecology & Ecosystem Management, Technical University of Munich, 85354 Freising, Germany, Bavarian Forest National Park, 94481 Grafenau, Germany
Christoph Heibl ORCID
Bavarian Forest National Park, 94481 Grafenau, Germany
Editor
Karthik Ram ORCID
Tags
multiple sequence alignment phylogeny genome guide tree R toolbox evolution
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GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 31
  • Total Committers: 2
  • Avg Commits per committer: 15.5
  • Development Distribution Score (DDS): 0.097
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Franz f****h@m****g 28
Christoph Heibl h****a@g****t 3
Committer Domains (Top 20 + Academic)
gmx.net: 1 mailbox.org: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 3
  • Total pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 1.33
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • karthik (3)
Pull Request Authors
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Dependencies

DESCRIPTION cran
  • Rcpp >= 1.0.0 imports
  • adephylo * imports
  • ape * imports
  • doSNOW * imports
  • foreach * imports
  • ips >= 0.0.11 imports
  • knitr * imports
  • methods * imports
  • pbmcapply * imports
  • phangorn * imports
  • plyr * imports
  • stringr * imports
  • useful * imports
  • phylobase >= 0.8.6 suggests
  • rmarkdown * suggests