protocol-timer
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.9%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: pranavmishra90
- License: mit
- Language: Jupyter Notebook
- Default Branch: main
- Size: 148 KB
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 1
- Releases: 5
Metadata Files
readme.md
Protocol Timer
A timer designed to follow along the steps of a laboratory protocol and provide notifications when it's time for the next step
Python Enviroment
The protocol timer (and this repository) works using python. To run the timer's notebook, you will need to have a python environment ready. For convenience, I have described the way to create an isolated python "environment" just for this timer.
Create it locally
Using conda / mamba, create a python environment locally to a folder env/
sh
mamba env create --prefix ./env -f ./environment.yml
You can substitute other conda-like commands for mamba, including conda, micromamba, etc.
Coming soon - launch in binder
Binder is an incredible free service that lets you launch this repository in your browser without having to install anything. At the moment, there appears to be a bug in how binder allows for the programmatic creation of new jupyter notebook cells - only the last step of the protocol is performed.
License
Copyright (c) 2023 Pranav Kumar Mishra
Owner
- Name: Pranav Kumar Mishra
- Login: pranavmishra90
- Kind: user
- Location: Chicago, IL
- Website: www.drpranavmishra.com
- Twitter: drpranavmishra
- Repositories: 5
- Profile: https://github.com/pranavmishra90
Physician-scientist in training. Post-Doctoral Research Fellow at Rush University. I tinker with tech as a fun hobby, which then helps out at work!
Citation (citation.cff)
cff-version: 1.2.0
title: Protocol Timer
message: >-
If you use this software, please cite it using the
metadata from this file
type: software
authors:
- given-names: Pranav Kumar
family-names: Mishra
email: pranav_k_mishra@rush.edu
name-particle: Pranav
affiliation: Rush University
orcid: 'https://orcid.org/0000-0001-5219-6269'
repository-code: 'https://github.com/pranavmishra90/protocol-timer'
url: >-
https://www.drpranavmishra.com/research/2023/protocol-timer
license: MIT
GitHub Events
Total
- Create event: 4
- Issues event: 1
- Release event: 3
- Delete event: 1
- Push event: 11
- Pull request event: 5
Last Year
- Create event: 4
- Issues event: 1
- Release event: 3
- Delete event: 1
- Push event: 11
- Pull request event: 5
Dependencies
- pranavmishra90/singulab latest build