datalad-redcap
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Institutional organization owner
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○Scientific vocabulary similarity
Low similarity (11.7%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: datalad
- License: other
- Language: Python
- Default Branch: main
- Size: 94.7 KB
Statistics
- Stars: 1
- Watchers: 5
- Forks: 0
- Open Issues: 8
- Releases: 0
Metadata Files
README.md
DataLad REDCap extension
This DataLad extension provides convenience commands for exporting data from REDCap into DataLad datasets. Information about the RedCAP project can be found at https://project-redcap.org/.
The extension is a working prototype.
Installation
The extension has no official release yet, but you can install the bleeding edge version using pip, directly from GitHub. This will also install the latest development version of DataLad Next extension. Using a virtual environment is recommended. Example installation:
```
create and enter a new virtual environment (optional)
$ virtualenv --python=python3 ~/env/dl-redcap $ source ~/env/dl-redcap/bin/activate
install from GitHub main branch
$ python -m pip install git+https://github.com/datalad/datalad-redcap.git@main ```
Commands
export-redcap-form: Export records from selected forms (instruments)export-redcap-project-xml: Export entire project as a REDCap XML Fileexport-redcap-report: Export a report that was defined in a projectredcap-query: Show names of available forms (instruments)
Usage examples
The example below will show available forms, export a given form from REDCap in csv format, and save the file in a DataLad dataset.
datalad create my-exports
cd my-exports
datalad redcap-query <api url>
datalad export-redcap-form <api url> <form name> exported.csv
Acknowledgements
This DataLad extension was developed with support from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under grant SFB 1451 (431549029, INF project).
Owner
- Name: DataLad
- Login: datalad
- Kind: organization
- Email: team@datalad.org
- Location: USA&Germany
- Website: http://datalad.org
- Repositories: 97
- Profile: https://github.com/datalad
Data distribution and management platform
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: datalad-redcap
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Michael
family-names: Hanke
- given-names: Michał
family-names: Szczepanik
repository-code: 'https://github.com/datalad/datalad-redcap'
url: >-
https://docs.datalad.org/projects/redcap/en/latest/?badge=latest
abstract: >-
This DataLad extension provides convenience commands for
exporting data from REDCap into DataLad datasets.
Information about the RedCAP project can be found at
https://project-redcap.org/.
license: MIT
GitHub Events
Total
- Watch event: 1
- Push event: 2
- Pull request event: 1
- Create event: 1
Last Year
- Watch event: 1
- Push event: 2
- Pull request event: 1
- Create event: 1
Dependencies
- actions/checkout v3 composite
- actions/setup-python v4 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite