Science Score: 54.0%
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
3 of 6 committers (50.0%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.4%) to scientific vocabulary
Keywords from Contributors
Repository
A Python package for interpretive topic modelling
Basic Info
Statistics
- Stars: 15
- Watchers: 3
- Forks: 0
- Open Issues: 10
- Releases: 12
Metadata Files
README.md
Hyperreal
Hyperreal is a Python tool for interactive qualitative analysis of large collections of documents.
Requirements
Hyperreal requires the installation of the Python programming language.
Installation
Hyperreal can be installed using Pip from the command line ( Windows, Mac) by running the following commands:
python -m pip install hyperreal
Usage
Hyperreal can be used in three different ways to flexibly support different use cases:
- as a command line application
- as a Python library
- as a local web application
All of hyperreal's functionality is available from the Python library, but you will need to write Python code to use it directly. The command line interface allows for quick and repeatable experimentation and automation for standard data types - for example if you often work with Twitter data the command line will allow you to rapidly work with many different Twitter data collections. The web application is currently focused solely on creating and interactive editing of models.
Command Line
The following script gives a basic example of using the command line interface
for hyperreal. This will work for cases where you have a plain text file
(here called corpus.txt), with each document in the collection on its own
line.
If you haven't worked with the command line before, you might find the following resources useful:
```
Create a corpus database from a plaintext file
hyperreal plaintext-corpus create corpus.txt corpus.db
Create an index from the corpus
hyperreal plaintext-corpus index corpus.db corpus_index.db
Create a model from that index, in this case with 128 clusters and
only include features present in 10 or more documents.
hyperreal model corpus_index.db --min-docs 10 --clusters 128
Use the web interface to serve the results of that modelling
After running this command point your web browser to http://localhost:8080
hyperreal plaintext-corpus serve corpus.db corpus_index.db
```
Library
This example script performs the same steps as the command line example.
``` python
from hyperreal import corpus, index
create and populate the corpus with some documents
c = corpus.PlainTextSqliteCorpus('corpus.db')
with open('corpus.txt', 'r') as f: # This will drop any line that has no text (such as a paragraph break) docs = (line for line in f if line.strip()) c.replace_docs(docs)
Index that corpus - note that we need to pass the corpus object for
initialisation.
idx = index.Index('corpus_index.db', corpus=c)
This only needs to be done once, unless the corpus changes.
idx.index()
Create a model on this index, with 128 clusters and only including features
that match at least 10 documents.
idx.initialiseclusters(nclusters=128, min_docs=10)
Refine the model for 10 iterations. Note that you can continue to refine
the model without initialising the clusters.
idx.refine_clusters(iterations=10)
Inspect the output of the model using the index instance (currently quite
limited). This will print the top 10 most frequent features in each
cluster.
for clusterid in idx.clusterids: clusterfeatures = idx.clusterfeatures(clusterid) for feature in clusterfeatures[:10]: print(feature)
Perform a boolean query on the corpus, looking for documents that contain
both apples AND oranges in the text field.
q = i[('text', 'apples')] & i[('text', 'oranges')]
Lookup all of the documents in the corpus that match this query.
docs = idx.get_docs(q)
'Pivot' the features in the index with respect to all cluster in the model.
This will show the top 10 features in each cluster that are similar to the
query.
for clusterdetail in idx.pivotclustersbyquery(query, topk=10): print(clusterdetail)
This will show the top 10 features for a selected set of cluster_ids.
for clusterdetail in idx.pivotclustersbyquery(query, clusterids=[3,5,7], topk=10): print(cluster_detail)
```
Development
Installation
To install the development version:
- Clone the repository using git.
From the cloned repository, use pip for an editable install:
pip install -e .
Running Tests
The full test suite and other checks are orchestrated via tox:
``` python -m pip install -e .[test]
To run just the testsuite
pytest
To run everything, including code formatting via black and check coverage
tox
```
Owner
- Name: Sam Hames
- Login: SamHames
- Kind: user
- Location: Australia
- Repositories: 2
- Profile: https://github.com/SamHames
Citation (CITATION.cff)
cff-version: 1.2.0
title: 'Hyperreal: a tool for interpretive topic modelling'
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
doi: 10.5281/zenodo.7251335
authors:
- given-names: Samuel
family-names: Hames
affiliation: The University of Queensland
orcid: 'https://orcid.org/0000-0002-1824-2361'
- given-names: Kateryna
family-names: Kasianenko
affiliation: Queensland University of Technology
orcid: 'https://orcid.org/0000-0002-7159-5676'
GitHub Events
Total
- Watch event: 2
Last Year
- Watch event: 2
Committers
Last synced: about 3 years ago
All Time
- Total Commits: 188
- Total Committers: 6
- Avg Commits per committer: 31.333
- Development Distribution Score (DDS): 0.383
Top Committers
| Name | Commits | |
|---|---|---|
| Sam Hames | s****m@h****u | 116 |
| Sam Hames | s****s@u****u | 49 |
| Sam Hames | s****s@q****u | 17 |
| Kat Kasianenko | k****o@g****m | 2 |
| MartinSchweinberger | m****h@g****m | 2 |
| Sam Hames | u****s@u****u | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 36
- Total pull requests: 27
- Average time to close issues: 17 days
- Average time to close pull requests: 2 days
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 0.67
- Average comments per pull request: 0.04
- Merged pull requests: 26
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 4
- Average time to close issues: N/A
- Average time to close pull requests: 1 day
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- SamHames (30)
- katkasian (6)
Pull Request Authors
- SamHames (24)
- katkasian (2)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/download-artifact v3 composite
- actions/setup-python v2 composite
- actions/upload-artifact v3 composite
- cherrypy >=18.6.0
- click >=8.1.0
- jinja2 >=3.1.0
- lxml *
- networkx >=3.0.0
- pyroaring >=0.3.4
- python-dateutil >=2.8.0
- regex >=2022.4.24