scikit-surgeryimage

Image processing, using OpenCV.

https://github.com/scikit-surgery/scikit-surgeryimage

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 2 DOI reference(s) in README
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Academic publication links
✓
Committers with academic emails
5 of 6 committers (83.3%) from academic institutions
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (11.3%) to scientific vocabulary

Keywords

opencv python scikit-surgery

Keywords from Contributors

surgery ucl ndi augmented-reality vtk ultrasound

Last synced: 6 months ago · JSON representation

Repository

Image processing, using OpenCV.

Basic Info

Host: GitHub
Owner: SciKit-Surgery
License: other
Language: Python
Default Branch: master
Homepage:
Size: 327 MB

Statistics

Stars: 3
Watchers: 2
Forks: 2
Open Issues: 1
Releases: 3

Topics

opencv python scikit-surgery

Created almost 6 years ago · Last pushed 6 months ago

Metadata Files

Readme Contributing License Citation

README.rst

scikit-surgeryimage
====================

.. image:: https://github.com/SciKit-Surgery/scikit-surgeryimage/raw/master/weiss_logo.png
   :height: 128px
   :width: 128px
   :target: https://github.com/SciKit-Surgery/scikit-surgeryimage
   :alt: Logo

|

.. image:: https://github.com/SciKit-Surgery/scikit-surgeryimage/workflows/.github/workflows/ci.yml/badge.svg
   :target: https://github.com/SciKit-Surgery/scikit-surgeryimage/actions
   :alt: GitHub Actions CI status

.. image:: https://coveralls.io/repos/github/SciKit-Surgery/scikit-surgeryimage/badge.svg?branch=master&service=github
    :target: https://coveralls.io/github/SciKit-Surgery/scikit-surgeryimage?branch=master
    :alt: Test coverage

.. image:: https://readthedocs.org/projects/scikit-surgeryimage/badge/?version=latest
    :target: http://scikit-surgeryimage.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. image:: https://img.shields.io/badge/Cite-SciKit--Surgery-informational
   :target: https://doi.org/10.1007/s11548-020-02180-5
   :alt: The SciKit-Surgery paper

.. image:: https://img.shields.io/twitter/url?style=social&url=http%3A%2F%2Fscikit-surgery.org
   :target: https://twitter.com/intent/tweet?screen_name=scikit_surgery&ref_src=twsrc%5Etfw
   :alt: Get in touch via twitter

.. image:: https://img.shields.io/twitter/follow/scikit_surgery?style=social
   :target: https://twitter.com/scikit_surgery?ref_src=twsrc%5Etfw
   :alt: Follow scikit_surgery on twitter




scikit-surgeryimage is a python only project to implement image processing algorithms
that are useful for image-guided surgery.

scikit-surgeryimage was developed at the `Wellcome EPSRC Centre for Interventional and Surgical Sciences`_ in `University College London (UCL)`_.

.. features-start

Features
--------

requirements.txt specifies a dependency on opencv-contrib-python-headless, so you can use any OpenCV python therein.
In addition, this project provides:

* `Convenience classes `_ for video read and write.
* `Utilities `_ to detect the number of cameras and prepare text for overlay on video.
* A `PointDetector `_ interface for video camera calibration and implementations such as OpenCV chessboard, ArUco, ChArUco and combinations.
* Generate `ChArUco `_ patterns
* `Interlacing and deinterlacing `_.
* Convenience wrappers for `erosion and dilation `_.

.. features-end

Installing
~~~~~~~~~~

You can pip install directly from the repository as follows:
::

    pip install scikit-surgeryimage


Developing
^^^^^^^^^^

You can clone the repository using the following command:

::

    git clone https://github.com/SciKit-Surgery/scikit-surgeryimage


Running the tests
^^^^^^^^^^^^^^^^^

You can run the unit tests by installing and running tox:

    ::

      pip install tox
      tox

Encountering Problems?
^^^^^^^^^^^^^^^^^^^^^^
Please check list of `common issues`_.

Contributing
^^^^^^^^^^^^

Please see the `contributing guidelines`_.


Useful links
^^^^^^^^^^^^

* `Source code repository`_
* `Documentation`_


Licensing and copyright
-----------------------

Copyright 2018 University College London.
scikit-surgeryimage is released under the BSD-3 license. Please see the `license file`_ for details.


Acknowledgements
----------------

Supported by `Wellcome`_ and `EPSRC`_.


.. _`Wellcome EPSRC Centre for Interventional and Surgical Sciences`: http://www.ucl.ac.uk/weiss
.. _`source code repository`: https://github.com/SciKit-Surgery/scikit-surgeryimage
.. _`Documentation`: https://scikit-surgeryimage.readthedocs.io
.. _`University College London (UCL)`: http://www.ucl.ac.uk/
.. _`Wellcome`: https://wellcome.ac.uk/
.. _`EPSRC`: https://www.epsrc.ac.uk/
.. _`contributing guidelines`: https://github.com/SciKit-Surgery/scikit-surgeryimage/blob/master/CONTRIBUTING.rst
.. _`license file`: https://github.com/SciKit-Surgery/scikit-surgeryimage/blob/master/LICENSE
.. _`common issues`: https://github.com/SciKit-Surgery/scikit-surgery/wikis/Common-Issues

Owner

Name: SciKit-Surgery
Login: SciKit-Surgery
Kind: organization
Email: s.thompson@ucl.ac.uk

Website: https://scikit-surgery.github.io/scikit-surgery/
Twitter: scikit_surgery
Repositories: 28
Profile: https://github.com/SciKit-Surgery

Compact Libraries for Surgical Navigation

GitHub Events

Total

Issues event: 4
Watch event: 1
Delete event: 4
Issue comment event: 1
Push event: 9
Pull request event: 1
Create event: 6

Last Year

Issues event: 4
Watch event: 1
Delete event: 4
Issue comment event: 1
Push event: 9
Pull request event: 1
Create event: 6

Committers

Last synced: over 1 year ago

All Time

Total Commits: 333
Total Committers: 6
Avg Commits per committer: 55.5
Development Distribution Score (DDS): 0.598

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Matt Clarkson	m**n@u**k	134
Thomas Dowrick	t**k@g**m	102
Stephen Thompson	s**n@u**k	49
Thomas Dowrick	t**k@u**k	37
Guofang Xiao	g**o@u**k	10
Mian Ahmad	m**d@u**k	1

Committer Domains (Top 20 + Academic)

ucl.ac.uk: 5

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 87
Total pull requests: 16
Average time to close issues: 16 days
Average time to close pull requests: about 2 hours
Total issue authors: 4
Total pull request authors: 4
Average comments per issue: 4.33
Average comments per pull request: 0.06
Merged pull requests: 15
Bot issues: 0
Bot pull requests: 1

Past Year

Issues: 3
Pull requests: 0
Average time to close issues: 4 months
Average time to close pull requests: N/A
Issue authors: 1
Pull request authors: 0
Average comments per issue: 0.67
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

thompson318 (72)
MattClarkson (9)
tdowrick (5)
mianasbat (1)

Pull Request Authors

thompson318 (8)
tdowrick (6)
MattClarkson (1)
dependabot[bot] (1)

Top Labels

Issue Labels

gitlab merge request (24)

Pull Request Labels

dependencies (1)

Packages

Total packages: 1
Total downloads:
- pypi 2,885 last-month

Total dependent packages: 3
Total dependent repositories: 8
Total versions: 48
Total maintainers: 2

pypi.org: scikit-surgeryimage

scikit-surgeryimage implements image processing tools and alogrithms for Image Guided Surgery.

Homepage: https://github.com/SciKit-Surgery/scikit-surgeryimage
Documentation: https://scikit-surgeryimage.readthedocs.io/
License: BSD-3 license
Latest release: 0.11.0
published 6 months ago

Versions: 48
Dependent Packages: 3
Dependent Repositories: 8
Downloads: 2,885 Last month

Rankings

Dependent packages count: 2.3%

Dependent repos count: 5.2%

Downloads: 9.0%

Average: 17.0%

Forks count: 29.8%

Stargazers count: 38.8%

Maintainers (2)

MattClarkson weiss_ucl

Last synced: 6 months ago

Dependencies

requirements-dev.txt pypi

coverage * development
coveralls * development
mock * development
parameterized * development
pyfakefs * development
pyinstaller * development
pylint * development
pytest * development
sphinx * development
sphinx_rtd_theme * development
tox * development

requirements.txt pypi

numpy *
opencv-contrib-python-headless >=4.2.0.32
scikit-surgerycore >=0.1.0

setup.py pypi

numpy *
opencv-contrib-python-headless >=4.2.0.32
scikit-surgerycore >=0.1.0

.github/workflows/ci.yml actions

actions/checkout v2 composite
actions/checkout master composite
actions/setup-python v1 composite
pypa/gh-action-pypi-publish master composite

ecosyste.ms

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Open Source Science

scikit-surgeryimage

Science Score: 49.0%

Keywords

Keywords from Contributors

Repository

Basic Info

Statistics

Topics

Metadata Files

README.rst

Owner

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

pypi.org: scikit-surgeryimage

Rankings

Maintainers (2)

Dependencies