variantplot
To create figures showing different protein variants, mutants etc
Science Score: 44.0%
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✓CITATION.cff file
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✓codemeta.json file
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○DOI references
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○Scientific vocabulary similarity
Low similarity (11.3%) to scientific vocabulary
Repository
To create figures showing different protein variants, mutants etc
Basic Info
- Host: GitHub
- Owner: jkaczmarski
- Language: Jupyter Notebook
- Default Branch: main
- Size: 1.3 MB
Statistics
- Stars: 9
- Watchers: 1
- Forks: 1
- Open Issues: 1
- Releases: 0
Metadata Files
README.md
VariantPlot
VariantPlot can be used to easily create figures that highlight the features of protein constructs & variant. Single proteins can be plotted, but you can also use VariantPlot to generate figures that compare different protein constructs (e.g. truncations, mutants, tagged variants).
Here's an example of what the output looks like by default, but there's lots of options for customisation too.
All you need is to fill in some basic information in a template Excel sheet. Here's a template of the input Excel file.
Currently, you can easily annotate things such as: - sequence start and end residues - substitution sites - glycosylation sites - residue, site-specific user-defined labels - protease cut-sites - N-terminal tags/flanks - C-terminal tags/flanks - Variant name & references
VariantPlot can output both png files or svg files, the latter of which can be easily edited further in programs such as Illustrator.
The style of the figures is customisable without having to edit code - you can easily change colors, fonts, text size etc.
Please let me know if you have any requests for additional features or run into any bugs or issues.
Owner
- Name: Joe Kaczmarski
- Login: jkaczmarski
- Kind: user
- Location: Canberra, AUS
- Company: Australian National University
- Website: https://jkaczmarski.github.io/
- Twitter: kaczmarski_joe
- Repositories: 1
- Profile: https://github.com/jkaczmarski
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Kaczmarski
given-names: Joe Alexander
orcid: https://orcid.org/0000-0001-8549-0122
title: "VariantPlot"
version: 1.0.0
date-released: 2023-10-04