neuronsimulationbenchmark

https://github.com/jarekrzdbk/neuronsimulationbenchmark

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
✓
Academic publication links
Links to: zenodo.org
○
Academic email domains
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (4.7%) to scientific vocabulary

Last synced: 6 months ago · JSON representation ·

Repository

Basic Info

Host: GitHub
Owner: jarekrzdbk
Language: Python
Default Branch: main
Size: 3.84 MB

Statistics

Stars: 0
Watchers: 1
Forks: 0
Open Issues: 0
Releases: 1

Created over 2 years ago · Last pushed about 2 years ago

Metadata Files

Readme Citation

README.md

Neuron Simulation Benchmark

Overview

This project compares performance of selected neuron simulators. We compare NEURON, Nest, and Brian2, using PyNN for neuron simulation.

Results

Comparison of Neuron Simulators running with PyNN

| Simulator | Time | Memory Usage | |-----------|---------|--------------| | NEURON | 0:00.73 | 104,728 KB | | Brian2 | 0:03.29 | 164,108 KB |

Comparison of Neuron Simulators Natively Using Original API of Each Respective Simulator

| Simulator | Time | Memory Usage | |-----------|---------|--------------| | NEURON | 0:00.76 | 66,156 KB | | Brian2 | 0:06.48 | 246,076 KB |

How to Run

Clone the repository.
Install dependencies using Conda: conda env create -f environment.yml
Activate the Conda environment: conda activate [env_name]
To run the benchmarks:
- ./benchmark.sh for the benchmark using pyNN.
- ./original_benchmark.sh for the benchmark without pyNN.

Owner

Name: Yaroslav Rozdobudko
Login: jarekrzdbk
Kind: user

Repositories: 1
Profile: https://github.com/jarekrzdbk

Citation (CITATION.cff)

# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!

cff-version: 1.2.0
title: NeuronSimulationBenchmark
message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Yaroslav
    family-names: Rozdobudko
    email: jarekrzdbk@gmail.com
identifiers:
  - type: doi
    value: 10.5281/zenodo.10425583
repository-code: 'https://github.com/jarekrzdbk/NeuronSimulationBenchmark'

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science