cyrcular-calling-main
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (3.5%) to scientific vocabulary
Last synced: 6 months ago
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Repository
Basic Info
- Host: GitHub
- Owner: shintafiaa
- License: mit
- Language: Python
- Default Branch: main
- Size: 24.4 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Created almost 2 years ago
· Last pushed almost 2 years ago
Metadata Files
Readme
License
Citation
README.md
Snakemake workflow: cyrcular-calling
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
Usage
The usage of this workflow is described in the Snakemake Workflow Catalog.
If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository.
Owner
- Name: Shinta Roudlotul Hanafia
- Login: shintafiaa
- Kind: user
- Location: Central Java, Indonesia
- Website: https://www.linkedin.com/in/shinta-hanafia-9669741b4/
- Repositories: 2
- Profile: https://github.com/shintafiaa
Computer Engineering (2018) Telkom University, Bandung.
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this workflow, please cite the article from preferred-citation and the workflow itself."
authors:
- family-names: "Hartmann"
given-names: "Till"
orcid: "https://orcid.org/0000-0002-6993-347X"
- family-names: "Lähnemann"
given-names: "David"
orcid: "https://orcid.org/0000-0002-9138-4112"
title: "snakemake-workflows/cyrcular-calling"
version: 1.2.0
doi: Zenodo DOI TBD
date-released: 2023-04-06
url: "https://github.com/snakemake-workflows/cyrcular-calling"
preferred-citation:
type: article
authors:
- family-names: "Tüns"
given-names: "Alicia Isabell"
orcid: "https://orcid.org/0000-0003-0025-1304"
- family-names: "Hartmann"
given-names: "Till"
orcid: "https://orcid.org/0000-0002-6993-347X"
- family-names: "Magin"
given-names: "Simon"
- family-names: "Chamorro González"
given-names: "Rocío"
orcid: "https://orcid.org/0000-0002-5653-7259"
- family-names: "Henssen"
given-names: "Anton George"
orcid: "https://orcid.org/0000-0003-1534-778X"
- family-names: "Rahmann"
given-names: "Sven"
orcid: "https://orcid.org/0000-0002-8536-6065"
- family-names: "Schramm"
given-names: "Alexander"
orcid: "https://orcid.org/0000-0001-7670-7529"
- family-names: "Köster"
given-names: "Johannes"
orcid: "https://orcid.org/0000-0001-9818-9320"
doi: "10.3389/fgene.2022.867018"
journal: "Frontiers in Genetics"
month: 05
year: 2022
title: "Detection and Validation of Circular DNA Fragments Using Nanopore Sequencing"