biograder
Science Score: 62.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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✓Committers with academic emails
1 of 8 committers (12.5%) from academic institutions -
✓Institutional organization owner
Organization paynelab has institutional domain (payne.byu.edu) -
○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (6.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: PayneLab
- License: mit
- Language: Python
- Default Branch: main
- Size: 5.41 MB
Statistics
- Stars: 2
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 6
Metadata Files
README.md
Automatic Homework Grading and Hints
The biograder package is a Python package that automatically grades bioinformatics homework assignments.
The package additionally provides hints to students as they work through the assignments in Google Colab.
These homework assignments allow students to have hands-on coding experiences with real data. The data used
in the homework problems comes from the cptac package. (For more information about the cptac package,
visit https://paynelab.github.io/cptac/).
How to use the biograder package
The biograder package is intended to be accessed and used through the
Google Colab interface. Homework assignments have been designed in Google
Colab for the following classes:
Developer documentation
Documentation for anyone wanting to understand the internal workings of the package is available on the GitHub repository in the devdocs folder.
License
See the LICENSE.md document on the GitHub repository.
Contact
This package is maintained by the Payne lab at Brigham Young University.
Owner
- Name: Payne Lab, Biology Department, BYU
- Login: PayneLab
- Kind: organization
- Website: payne.byu.edu
- Repositories: 25
- Profile: https://github.com/PayneLab
Citation (CITATION.cff)
# YAML 1.2
---
authors:
-
family-names: Taylor
given-names: "Mason D."
-
family-names: Mendenhall
given-names: Bryn
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family-names: Woods
given-names: "Calvin S."
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family-names: Rasband
given-names: "Madeline E."
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family-names: Vallejo
given-names: "Milene C."
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family-names: Bailey
given-names: "Elizabeth G."
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family-names: Payne
given-names: "Samuel H."
cff-version: "1.1.0"
date-released: 2021-06-02
doi: "10.1128/jmbe.00167-21"
keywords:
- cancer
- genomics
- proteomics
- bioinformatics
- "classroom teaching"
- "online module"
- Python
license: MIT
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/PayneLab/biograder"
title: "Online Tools for Teaching Cancer Bioinformatics"
version: "0.5.1"
...
GitHub Events
Total
- Member event: 1
Last Year
- Member event: 1
Committers
Last synced: over 3 years ago
All Time
- Total Commits: 162
- Total Committers: 8
- Avg Commits per committer: 20.25
- Development Distribution Score (DDS): 0.698
Top Committers
| Name | Commits | |
|---|---|---|
| Calvin Woods | c****s@b****u | 49 |
| maddyras | 7****s@u****m | 37 |
| MTschool20 | 7****0@u****m | 31 |
| maddyras | m****w@g****m | 22 |
| Mason | m****7@o****m | 11 |
| Bryn Mendenhall | B****n@b****n | 7 |
| Sam Payne | s****e@g****m | 3 |
| Calvin Woods | 3****3@u****m | 2 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 11 months ago
All Time
- Total issues: 0
- Total pull requests: 25
- Average time to close issues: N/A
- Average time to close pull requests: 7 minutes
- Total issue authors: 0
- Total pull request authors: 3
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 24
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- maddyras (18)
- MTschool20 (4)
- caldog3 (3)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 69 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 5
- Total maintainers: 1
pypi.org: biograder
Python packaging for biograder: automatic homework grading and hints
- Homepage: https://github.com/PayneLab/biograder
- Documentation: https://paynelab.github.io/biograder/
- License: MIT License
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Latest release: 0.5.1
published about 5 years ago