Data

Tools

Indexes

Applications

Experiments

Open Source Science

idpflex

idpflex: Analysis of Intrinsically Disordered Proteins by Comparing Simulations to Small Angle Scattering Experiments - Published in JOSS (2018)

https://github.com/jmborr/idpflex

Science Score: 59.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 3 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: joss.theoj.org
  • ✓
    Committers with academic emails
    2 of 4 committers (50.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.7%) to scientific vocabulary

Keywords

intrinsically-disordered lmfit md neutron proteins sans saxs scattering simulations

Scientific Fields

Mathematics Computer Science - 84% confidence
Last synced: 6 months ago · JSON representation

Repository

Analysis of intrinsically disordered proteins by comparing MD simulations to Small Angle Scattering experiments

Basic Info
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 4
  • Open Issues: 19
  • Releases: 0
Archived
Topics
intrinsically-disordered lmfit md neutron proteins sans saxs scattering simulations
Created about 8 years ago · Last pushed about 3 years ago
Metadata Files
Readme Changelog Contributing License Authors

README.rst 

=======
idpflex
=======


.. image:: https://img.shields.io/pypi/v/idpflex.svg
        :target: https://pypi.python.org/pypi/idpflex

.. image:: https://travis-ci.org/jmborr/idpflex.svg?branch=master
        :target: https://travis-ci.org/jmborr/idpflex/?badge=latest

.. image:: https://readthedocs.org/projects/idpflex/badge/?version=latest
        :target: http://idpflex.readthedocs.io/en/latest/?badge=latest
        :alt: Documentation Status

.. image:: https://badges.gitter.im/idpflex/Lobby.svg
   :alt: Join the chat at https://gitter.im/idpflex/Lobby
   :target: https://gitter.im/idpflex/Lobby?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge

.. image:: http://joss.theoj.org/papers/10.21105/joss.01007/status.svg
   :target: https://doi.org/10.21105/joss.01007

Analysis of intrinsically disordered proteins by comparing MD simulations to
Small Angle Scattering experiments.

Owner

  • Name: Jose Borreguero
  • Login: jmborr
  • Kind: user
  • Company: Oak Ridge National Laborator

Software Scientist - Research Software Engineering Group - Computer Science and Mathematics Division - Oak Ridge National Laboratory

GitHub Events

Total
Last Year

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 267
  • Total Committers: 4
  • Avg Commits per committer: 66.75
  • Development Distribution Score (DDS): 0.086
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Jose Borreguero b****o@g****m 244
Connor Pigg c****2@i****u 18
Borreguero Calvo j****q@o****v 4
The Gitter Badger b****r@g****m 1
Committer Domains (Top 20 + Academic)
gitter.im: 1 ornl.gov: 1 illinois.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 53
  • Total pull requests: 47
  • Average time to close issues: 6 days
  • Average time to close pull requests: 18 days
  • Total issue authors: 2
  • Total pull request authors: 4
  • Average comments per issue: 0.23
  • Average comments per pull request: 0.23
  • Merged pull requests: 36
  • Bot issues: 0
  • Bot pull requests: 6
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • jmborr (42)
  • ConnorPigg (10)
Pull Request Authors
  • jmborr (35)
  • dependabot[bot] (6)
  • ConnorPigg (5)
  • gitter-badger (1)
Top Labels
Issue Labels
properties (11) fitting (9) documentation (7) integration (6) notebooks (5) bug (4) clustering (4) release (4) other (2) optimization (2) testing (2) ribosome (1)
Pull Request Labels
properties (9) dependencies (6) documentation (6) integration (5) notebooks (5) clustering (4) fitting (3) bug (3) release (2) other (1) optimization (1) testing (1)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 16 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 8
  • Total maintainers: 1
pypi.org: idpflex
  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 16 Last month
Rankings
Dependent packages count: 7.3%
Forks count: 15.4%
Average: 22.0%
Dependent repos count: 22.1%
Stargazers count: 25.1%
Downloads: 40.1%
Maintainers (1)
jose.borreguero
Last synced: 6 months ago

Dependencies

notebooks/pip_requirements.txt pypi
  • nglview *
  • pathos *
requirements.txt pypi
  • MDAnalysis *
  • cython *
  • future *
  • h5py *
  • lmfit *
  • matplotlib *
  • mdtraj *
  • numpy *
  • pandas *
  • scipy *
  • sphinx *
  • sphinx_rtd_theme *
  • sphinxcontrib-bibtex *
  • tqdm *
requirements_dev.txt pypi
  • PyYAML ==3.11 development
  • Sphinx ==1.4.8 development
  • bumpversion ==0.5.3 development
  • coverage ==4.1 development
  • cryptography ==1.7 development
  • flake8 ==2.6.0 development
  • matplotlib ==2.1.1 development
  • pip ==9.0.1 development
  • pytest ==2.9.2 development
  • pytest-runner ==2.11.1 development
  • tox ==2.3.1 development
  • watchdog ==0.8.3 development
  • wheel ==0.29.0 development
setup.py pypi