Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (16.4%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Try the demo
Basic Info
- Host: GitHub
- Owner: NLeSC
- License: apache-2.0
- Language: JavaScript
- Default Branch: master
- Homepage: http://www.idarksurvey.com/
- Size: 69.3 MB
Statistics
- Stars: 21
- Watchers: 3
- Forks: 11
- Open Issues: 28
- Releases: 2
Topics
Metadata Files
README.md
SPOT - extensible facet browser
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Preview
Quick note on privacy
When the data is imported to SPOT, it is not saved in any cloud platforms. Your data stays only in your browser regardless what SPOT instance you are using (SPOT demo instance, SPOT-desktop).
What is SPOT?
SPOT is an open science platform on which researchers can visually analyze and compare the datasets from published scientific journal articles. It is also a visual data analytics tool for multi-dimensional datasets. SPOT allows researchers to recreate representations (plots) in the publications and do more exploration. In this way, static plots in the publications become interactive and researchers can look at the data from different angles. The interactive dashboards for the quick analysis of datasets and easy identification of correlations between variables can be done in only a few clicks. The tool was initially developed for the iDARK project, which aimed to combine and visualize the worldwide data within the most general models of dark matter. The published datasets in this research project are being collected at www.idarksurvey.com. SPOT was designed as a generic tool in order to extend and reuse it in other disciplines than physics. It is quick and responsive, even for data sets containing huge number of records.
More details about SPOT can be found at https://research-software.nl/software/spot
How to run it
Make sure you have git installed on your system.
Prerequisites for running SPOT as stand-alone website using crossfilter:
- follow the instructions to install node.js:
- via package manager (suggested)
- Binaries
- clone this repository:
bash git clone https://github.com/NLeSC/spot.git && cd spot - install dependencies:
bash npm installNote: some dependencies may require node-gyp. If you get errors during compilation of this package, you may need to install following packages on Ubuntu system or equivalent packages for your distribution.bash sudo apt-get install -y build-essential python libpq-dev - Create .env file using .env.sample and adjust the settings if necassary
- start the web the application
bash npm start - open http://localhost:9966 in a web browser
Building the website is only tested on Linux, but it should work on any OS (Mac OS X for example) that is supported by node and npm.
Hosting the site can be done by any webserver.
Make sure that Javascript is enabled in your web browser. SPOT is fully functional in Google Chrome and Chromium web browsers and it should work in other web browsers. Otherwise, please submit an issue.
Using Docker (tested on Linux)
Get the latest Docker image
docker pull nlesc/spot:latestAlternatively, you can build the Docker image yourself
docker build --network=host -t nlesc/spot .Run SPOT in a container
docker run --rm --net=host -ti -p "9966:9966" nlesc/spotOpen http://localhost:9966 in a web browser
If you want to run it using custom settings in .env file:
docker run --rm --net=host -ti -v $(pwd)/.env:/app/.env -p "80:80" spot
SQL Database
Spot can also work with a PostgreSQL database, but this requires either a local or a remote service to run. Communication between the client and the database server is achieved by using web socket.
In order to use SPOT with a PostreSQL server, you need to clone the spot-server repository and follow the instructions in the README. In general, these are the steps to follow:
make sure that PostreSQL service is runnning.
upload your data to the database with the
spot-import.jsscriptrun the SPOT-server with the
spot-server.jsscript
Desktop version
Desktop version of SPOT is still under development. Available downloads can be found here.
Documentation
SPOT API documentation can be found here.
Credits
Jisk Attema, Faruk Diblen the Netherlands eScience Center
Owner
- Name: Netherlands eScience Center
- Login: NLeSC
- Kind: organization
- Location: Amsterdam, The Netherlands
- Website: https://esciencecenter.nl
- Repositories: 206
- Profile: https://github.com/NLeSC
Citation (CITATION.cff)
# YAML 1.2
---
authors:
-
affiliation: "Netherlands eScience Center"
family-names: Attema
given-names: Jisk
-
affiliation: "Netherlands eScience Center"
family-names: Diblen
given-names: Faruk
orcid: "https://orcid.org/0000-0002-0989-929X"
cff-version: 1.2.0
commit: aa98969b99151c507d9502a1bf9bd1071e31af8a
date-released: 2017-10-07
doi: 10.5281/zenodo.1003346
keywords:
- visualization
- "big data"
- "visual data analytics"
- "multi-dimensional data"
license: Apache-2.0
message: "If you use this software, please cite it using these metadata."
repository-code: "https://github.com/NLeSC/spot"
title: spot
version: "0.1.0"
GitHub Events
Total
Last Year
Committers
Last synced: 6 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Jisk Attema | j****a@e****l | 583 |
| fdiblen | f****n@e****l | 225 |
| Jurriaan H. Spaaks | j****s@e****l | 13 |
| Willem van Hage | w****e@e****l | 6 |
| Laurens Bogaardt | l****t@g****m | 5 |
| Stefan Verhoeven | s****n@e****l | 2 |
| Abel Soares Siqueira | a****a@g****m | 2 |
| Ruud Steltenpool | g****m@s****m | 1 |
| Ben van Werkhoven | b****n@e****l | 1 |
| Bob Stienen | b****n@s****l | 1 |
| Jisk Attema | j****a@e****a | 1 |
| Dafne van Kuppevelt | d****t@e****l | 1 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 58
- Total pull requests: 42
- Average time to close issues: about 1 year
- Average time to close pull requests: 7 months
- Total issue authors: 14
- Total pull request authors: 7
- Average comments per issue: 0.95
- Average comments per pull request: 0.79
- Merged pull requests: 14
- Bot issues: 0
- Bot pull requests: 26
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- evertrol (20)
- fdiblen (10)
- l-hendriks (7)
- arnikz (5)
- jiskattema (3)
- bakhshir (3)
- jspaaks (2)
- bstienen (2)
- egpbos (1)
- franktakes (1)
- felipeZ (1)
- robertoostenveld (1)
- nmanuben (1)
- dafnevk (1)
Pull Request Authors
- dependabot[bot] (26)
- jspaaks (5)
- fdiblen (5)
- jiskattema (3)
- steltenpower (1)
- bstienen (1)
- abelsiqueira (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
-
Total downloads:
- npm 1 last-month
- Total dependent packages: 0
- Total dependent repositories: 3
- Total versions: 2
- Total maintainers: 1
npmjs.org: spot-framework
Spot: an extensible facet browser. Easily, interactively and quickly visualize complex data.
- Homepage: https://github.com/NLeSC/spot
- License: Apache-2.0
-
Latest release: 0.0.6
published over 8 years ago
Rankings
Maintainers (1)
Dependencies
- 1383 dependencies
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- gridster ^0.5.6 development
- html-webpack-plugin ^4.0.0-beta.5 development
- image-webpack-loader ^4.6.0 development
- imports-loader ^0.8.0 development
- intro.js ^2.5.0 development
- istanbul ^0.4.3 development
- jasmine ^2.4.1 development
- jquery ^3.1.1 development
- jsdoc ^3.4.0 development
- json-loader ^0.5.7 development
- local-links ^1.4.0 development
- material-design-icons ^3.0.1 development
- material-design-lite ^1.1.3 development
- minami ^1.1.1 development
- moment ^2.13.0 development
- moment-timezone ^0.5.4 development
- puglatizer ^1.2.0 development
- semistandard ^9.0.0 development
- sigma ^1.2.0 development
- socket.io-client ^2.2.0 development
- sortablejs ^1.4.2 development
- spot-framework git://github.com/NLeSC/spot-framework.git development
- style-loader ^0.23.1 development
- stylus ^0.54.5 development
- terser-webpack-plugin ^1.2.1 development
- vis ^4.19.1 development
- webpack-bundle-analyzer ^3.0.3 development
- webpack-dev-server ^3.1.14 development
- webpack-node-externals ^1.7.2 development
- babel-polyfill ^6.26.0
- concurrently ^4.1.0
- cors-anywhere ^0.4.1
- cpx ^1.5.0
- crossfilter2 ^1.5.3
- dotenv ^6.2.0
- dotenv-webpack ^1.7.0
- file-saver ^1.3.3
- form-data ^2.3.1
- mkdirp ^0.5.1
- net ^1.0.2
- tls 0.0.1
- webpack ^4.29.0
- webpack-cli ^3.2.1
- 1332 dependencies