Science Score: 54.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.8%) to scientific vocabulary
Repository
Pupilometry GUI
Basic Info
- Host: GitHub
- Owner: Spruce-tone
- License: agpl-3.0
- Language: Python
- Default Branch: main
- Size: 3.33 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 1
Metadata Files
README.md
Pupilometry
It is commonly hard to take image using CMOS (or CCD) sensor during taking MRI (magnetic resonance imaging) signal due to the magnetic compatibility or electromagnetic interference. For that, we bought commercialized MR compatible camera and have developed this software to control the devices conveniently. This tool implement the keypoint detection model to automatically measure the pupil size in real time. If you want to detect keypoint from another type object, refer this site and train for your data
Requirements
Copy below files from here and paste to lib directory
TIS_UDSHL11_x64.dll
tisgrabber_x64.dll
Refer to the conda envrionment file for installing python packages
Test environment
CPU : AMD Ryzen 9 5900X
GPU : NVIDIA GeForceRTX 3080Ti
memory : 64 GB
OS : windows11
Virtual env : Conda
TTL generator : Master9
hardware
We used commercial MR compatible camera(12M-i, MRC), filter box and TTL recevier (Adventech) bought from MRC.
I designed this software to recognize the TTL signal that Vpp=5V, Vmax=5V, Vmin=0 and duration > 200ms
Run
Run FlyingSesame.py file in terminal
python FlyingSesame.py
Mascot
Reference
[1] https://github.com/TheImagingSource/IC-Imaging-Control-Samples
[2] https://github.com/DeepLabCut/DeepLabCut
Owner
- Login: Spruce-tone
- Kind: user
- Repositories: 16
- Profile: https://github.com/Spruce-tone
Citation (citation.cff)
cff-version: 1.0.0
authors:
- family-names: "Jo"
given-names: "Yongjae"
orcid: "https://orcid.org/0000-0001-6585-0012"
title: "Pupilometry, FlyingSesame"
version: 1.0.0
doi : 10.5281/zenodo.7575101
date-released: 2023-01-27
url: "https://github.com/Spruce-tone/pupil"
preferred-citation:
type: software
authors:
- family-names: "Jo"
given-names: "Yongjae"
orcid: "https://orcid.org/0000-0001-6585-0012"
GitHub Events
Total
Last Year
Issues and Pull Requests
Last synced: almost 2 years ago
All Time
- Total issues: 0
- Total pull requests: 1
- Average time to close issues: N/A
- Average time to close pull requests: 1 minute
- Total issue authors: 0
- Total pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 0
- Pull request authors: 0
- Average comments per issue: 0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
Pull Request Authors
- Spruce-tone (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- continuumio/miniconda3 latest build
- absl-py ==1.0.0
- altgraph ==0.17.2
- astunparse ==1.6.3
- cached-property ==1.5.2
- cachetools ==5.0.0
- charset-normalizer ==2.0.11
- colorama ==0.4.4
- colorcet ==3.0.0
- cycler ==0.11.0
- decorator ==4.4.2
- deeplabcut-live ==1.0.1
- filterpy ==1.4.5
- flatbuffers ==2.0
- fonttools ==4.29.1
- future ==0.18.2
- gast ==0.4.0
- google-auth ==2.6.0
- google-auth-oauthlib ==0.4.6
- google-pasta ==0.2.0
- grpcio ==1.43.0
- h5py ==3.6.0
- idna ==3.3
- imageio ==2.15.0
- imageio-ffmpeg ==0.4.5
- imgaug ==0.4.0
- importlib-metadata ==4.11.0
- joblib ==1.1.0
- keras ==2.7.0
- keras-preprocessing ==1.1.2
- kiwisolver ==1.3.2
- libclang ==13.0.0
- llvmlite ==0.38.0
- markdown ==3.3.6
- matplotlib ==3.5.1
- matplotlib-inline ==0.1.3
- moviepy ==1.0.3
- msgpack ==1.0.3
- msgpack-numpy ==0.4.7.1
- networkx ==2.6.3
- numba ==0.55.1
- numexpr ==2.8.1
- numpy ==1.18.5
- oauthlib ==3.2.0
- opencv-python ==4.5.5.62
- opt-einsum ==3.3.0
- packaging ==21.3
- pandas ==1.3.5
- param ==1.12.0
- patsy ==0.5.2
- pefile ==2021.9.3
- pillow ==9.0.1
- proglog ==0.1.9
- prompt-toolkit ==3.0.27
- protobuf ==3.19.4
- psutil ==5.9.0
- py-cpuinfo ==5.0.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pyct ==0.4.8
- pyinstaller ==4.9
- pyinstaller-hooks-contrib ==2022.1
- pyparsing ==3.0.7
- pyqt5 ==5.15.6
- pyqt5-qt5 ==5.15.2
- pyqt5-sip ==12.9.1
- pyqtgraph ==0.12.3
- pytz ==2021.3
- pywavelets ==1.2.0
- pywin32-ctypes ==0.2.0
- pyyaml ==6.0
- pyzmq ==22.3.0
- requests ==2.27.1
- requests-oauthlib ==1.3.1
- rsa ==4.8
- ruamel-yaml ==0.17.20
- ruamel-yaml-clib ==0.2.6
- scikit-image ==0.18.1
- scikit-learn ==1.0.2
- scipy ==1.7.3
- shapely ==1.8.0
- statsmodels ==0.13.2
- tables ==3.6.1
- tabulate ==0.8.9
- tensorboard ==2.8.0
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- tensorflow ==2.7.1
- tensorflow-estimator ==2.7.0
- tensorflow-io-gcs-filesystem ==0.24.0
- tensorpack ==0.11
- termcolor ==1.1.0
- tf-slim ==1.1.0
- threadpoolctl ==3.1.0
- tifffile ==2021.11.2
- tqdm ==4.62.3
- typing-extensions ==4.0.1
- urllib3 ==1.26.8
- werkzeug ==2.0.3
- wrapt ==1.13.3
- wxpython ==4.0.7.post2
- zipp ==3.7.0