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fragterminomics

Annotation and processing of peptides from FragPipe search results

https://github.com/miguelcos/fragterminomics

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
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    Academic publication links
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (7.7%) to scientific vocabulary

Keywords

analysis proteolysis proteolytic-enzymes proteomics-data-analysis proteomics-data-integration r rstats
Last synced: 6 months ago · JSON representation ·

Repository

Annotation and processing of peptides from FragPipe search results

Basic Info
  • Host: GitHub
  • Owner: MiguelCos
  • Language: R
  • Default Branch: master
  • Homepage:
  • Size: 42.4 MB
Statistics
  • Stars: 3
  • Watchers: 1
  • Forks: 1
  • Open Issues: 13
  • Releases: 0
Topics
analysis proteolysis proteolytic-enzymes proteomics-data-analysis proteomics-data-integration r rstats
Created about 4 years ago · Last pushed over 2 years ago
Metadata Files
Readme Citation

README.md

Fragterminomics

A data analysis approach for extracting information related to proteolytic activity (N-terminomics) from shotgun proteomics data. Some of the processing functions were optimzed for FragPipe search results.

Installation

You can install the development version of Fragterminomics by typing:

r devtools::install_github("MiguelCos/Fragterminomics")

Usability example:

You can find an use case of this workflow, together with experimental and data analysis description in the following link here

Owner

  • Name: Miguel Cosenza-Contreras
  • Login: MiguelCos
  • Kind: user
  • Location: Freiburg, Germany
  • Company: Universitätsklinikum Freiburg

I am a biologist with interest in proteomics, bioinformatics and data science. My main experience is related to the use of R for proteomics data analyses.

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Cosenza-Contreras"
  given-names: "Miguel"
  orcid: "https://orcid.org/0000-0002-9727-3229"
- family-names: "Seredynska"
  given-names: "Adrianna"
  orcid:
title: "Fragterminomics"
version: 1.0.0
doi:
date-released:
url: "https://github.com/MiguelCos/Fragterminomics"

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Dependencies

DESCRIPTION cran
  • R >= 2.10 depends