sperm-quality-heat

Data and R code of the manuscript "Summer heat during spermatogenesis in bulls" by Jens Vanselow et al.

https://github.com/anjaeggert/sperm-quality-heat

Science Score: 44.0%

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CITATION.cff file
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Repository

Data and R code of the manuscript "Summer heat during spermatogenesis in bulls" by Jens Vanselow et al.

Basic Info

Host: GitHub
Owner: AnjaEggert
License: cc-by-4.0
Language: HTML
Default Branch: main
Size: 1.84 MB

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Releases: 1

Created over 2 years ago · Last pushed over 2 years ago

Metadata Files

Readme License Citation

README.md

Sperm-quality-heat

This repository contains data and source code to reproduce the data and statistical analysis and figures of the manuscript submitted to the journal "Andrology":

Summer heat during spermatogenesis reduces in vitro blastocyst rates and affects sperm quality of next generation bulls by Jens Vanselow, Claudia Wesenauer, Anja Eggert, Arpna Sharma and Frank Becker

Research Institute for Farm Animal Biology (FBN), Dummerstorf, Germany

License

This work is licensed under a Creative Commons Attribution 4.0 International License.

In order to reference this software, please consider the information in the CITATION.cff file.

Usage

We run the data and statistical analysis on Windows 10.

THE REPOSITORY CONTAINS:
- Folder data with 5 csv-files:
- air-temperature-station.csv
- rel-humidity-station.csv
- sperm-volume-density.csv
- sperm-motility.csv
- blastocyst-rates.csv
- Folder code with corresponding 4 Quarto-Markdown and rendered HTML files and a bibliography file:
- Fig2-heat-thi.qmd
- Fig3-sperm-volume-density.qmd
- Fig4-sperm-motility.qmd
- Fig5-blastocyst-rates.qmd
- references.bib
TABLES
- Table 1: Results of LMM predicting the influence of season (summer/winter) and generation (F0/F1) on sperm quality parameters
FIGURES
- Figure 1: Schematic drawing of the experimental design
- Figure 2. Temperature humidity index (THI) over the period from April 2018 to March 2019
- Figure 3: Ejaculate volumes and sperm densities of semen collected from F0 founders and respective F1 offspring bulls
- Figure 4: Total motility of fresh semen and following thermo resistance tests of semen collected from F0 founders and respective F1 offspring bulls
- Figure 5: Blastocyst rates eight days after in vitro fertilization and total hatch rates of semen samples collected from F0 founder bulls during winter and summer season and from respective F1 offspring

Owner

Name: Anja
Login: AnjaEggert
Kind: user
Location: Germany

Website: https://anja-eggert.net/
Twitter: AnjaEggert42
Repositories: 2
Profile: https://github.com/AnjaEggert

Citation (CITATION.cff)

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
  - family-names: Vanselow
    given-names: Jens
    orcid: https://orcid.org/0000-0001-7374-4615
  - family-names: Wesenauer
    given-names: Claudia
    orcid: none
  - family-names: Eggert
    given-names: Anja
    orcid: https://orcid.org/0000-0003-3893-6851
  - family-names: Sharma
    given-names: Arpna
    orcid: https://orcid.org/0000-0002-9813-1716
  - family-names: Becker
    given-names: Frank
    orcid: https://orcid.org/0000-0001-9832-3091

title: "sperm-quality-heat"
version: 1.0
date-released: 2023-08-31
license: cc-by-4.0
repository-code: "https://github.com/AnjaEggert/sperm-quality-heat"

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