spinnutilities
Utility classes and functions for SpiNNaker projects
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (13.8%) to scientific vocabulary
Keywords
Repository
Utility classes and functions for SpiNNaker projects
Basic Info
Statistics
- Stars: 1
- Watchers: 10
- Forks: 5
- Open Issues: 5
- Releases: 5
Topics
Metadata Files
README.md
SpiNNUtils
This provides basic utility functions and classes to other parts of SpiNNaker's tooling. Nothing in here knows anything about SpiNNaker functionality.
spinn_utilities.abstract_base
Provides a simplified (and faster) version of the standard Python Abstract Base Class functionality.
spinn_utilities.conf_loader
The structure to handle loading of SpiNNaker-style configuration files.
spinn_utilities.executable_finder
Utility for discovering executables to load onto SpiNNaker nodes.
spinn_utilities.helpful_functions
Miscellaneous bits.
spinn_utilities.ordered_set
A set class where the elements have an order defined by when they were inserted.
spinn_utilities.overrides
Decorator for declaring where a method overrides another method.
spinn_utilities.progress_bar
Generalised progress bar printer.
spinn_utilities.socket_address
Holder for the locations of network resources.
spinn_utilities.timer
General code timer utility.
Generating Aggregated Citation Files
The spinn_utilities.citation.citation_aggregator module can be executed to generate a .cff file consisting of the Citation.cff file from the given top-level module, plus references made up from the dependencies of the top-level module. If these dependencies have .cff files themselves, the references will contain the information from those files, otherwise it will use the version number and name of the module as a reference. The tool can also create a DOI for the version of the tools in use which can then be cited. This makes use of the Zenodo service.
To use the tool, run the following after installing SpiNNUtils:
``` python -m spinnutilities.citation.citationaggregator [-h] [--createdoi] [--publishdoi] [--doititle DOITITLE] [--previousdoi PREVIOUSDOI] [--zenodoaccesstoken ZENODOACCESS_TOKEN] outputpath top_module
positional arguments: outputpath The file to store the result in topmodule The module to start with
optional arguments: -h, --help show this help message and exit --createdoi Create a DOI from the resulting citation on Zenodo --publishdoi Publish the DOI created --doititle DOITITLE The title to give the created DOI --previousdoi PREVIOUSDOI The DOI this is a newer version of --zenodoaccesstoken ZENODOACCESSTOKEN Access token for Zenodo ```
Documentation
Owner
- Name: SpiNNaker - University of Manchester
- Login: SpiNNakerManchester
- Kind: organization
- Email: spinnakerusers@googlegroups.com
- Location: Manchester, UK
- Website: http://spinnakermanchester.github.io/
- Repositories: 78
- Profile: https://github.com/SpiNNakerManchester
Software for the SpiNNaker Million Core Neuromorphic Machine. Part of the Human Brain Project and EBRAINS
Citation (CITATION.cff)
# Copyright (c) 2017 The University of Manchester
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# https://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
cff-version: 1.2.0
message: If you use this software, please cite it as below.
preferred-citation:
type: article
doi: 10.3389/fnins.2019.00231
issn: 1662-453X
url: https://www.frontiersin.org/articles/10.3389/fnins.2019.00231
title: "SpiNNTools: The Execution Engine for the SpiNNaker Platform"
journal: Frontiers in Neuroscience
volume: 13
year: 2019
month: 3
abstract: SpiNNaker is a massively parallel distributed architecture primarily focused on real time simulation of spiking neural networks. The largest realization of the architecture consists of one million general purpose processors, making it the largest neuromorphic computing platform in the world at the present time. Utilizing these processors efficiently requires expert knowledge of the architecture to generate executable code and to harness the potential of the unique inter-processor communications infra-structure that lies at the heart of the SpiNNaker architecture. This work introduces a software suite called SpiNNTools that can map a computational problem described as a graph into the required set of executables, application data and routing information necessary for simulation on this novel machine. The SpiNNaker architecture is highly scalable, giving rise to unique challenges in mapping the problem to the machines resources, loading the generated files to the machine and subsequently retrieving the results of simulation. In this paper we describe these challenges in detail and the solutions implemented.
authors:
- given-names: Andrew
family-names: Rowley
affiliation: University Of Manchester
email: Andrew.Rowley@manchester.ac.uk
orcid: https://orcid.org/0000-0002-2646-8520
website: https://www.researchgate.net/profile/Andrew_Rowley2
- given-names: Christian Y.
family-names: Brenninkmeijer
affiliation: University Of Manchester
email: christian.brenninkmeijer@manchester.ac.uk
orcid: https://orcid.org/0000-0002-2937-7819
website: https://www.researchgate.net/profile/Christian_Brenninkmeijer
- given-names: Simon
family-names: Davidson
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0001-5385-442X
website: https://research.manchester.ac.uk/en/persons/simon.davidson
- given-names: Donal
family-names: Fellows
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0002-9091-5938
website: https://www.researchgate.net/profile/Donal-Fellows
- given-names: Andrew
family-names: Gait
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0001-9349-1096
website: https://personalpages.manchester.ac.uk/staff/andrew.gait/
- given-names: David R.
family-names: Lester
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0002-7267-291X
- given-names: Luis A.
family-names: Plana
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0002-6113-3929
website: https://research.manchester.ac.uk/en/persons/luis.plana
- given-names: Oliver
family-names: Rhodes
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0003-1728-2828
website: https://research.manchester.ac.uk/en/persons/oliver.rhodes
- given-names: Alan B.
family-names: Stokes
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0002-6110-1484
- given-names: Steve B.
family-names: Furber
affiliation: University Of Manchester
orcid: https://orcid.org/0000-0002-6524-3367
website: https://research.manchester.ac.uk/en/persons/steve.furber
title: The container for common code used by the SpiNNaker tool chain in general
authors:
- name: SpiNNaker Software Team
alias: For a list of contributors see https://github.com/SpiNNakerManchester/SpiNNUtils/graphs/contributors or for a combined list see https://spinnakermanchester.github.io/latest/LicenseAgreement.html#contributors
address: University of Manchester, Oxford Road
city: Manchester
country: GB
email: spinnakerusers@googlegroups.com
post-code: M13 9PL
website: https://apt.cs.manchester.ac.uk/projects/SpiNNaker/
url: https://spinnakermanchester.github.io/
contact:
- address: University of Manchester, Oxford Road
city: Manchester
country: GB
email: spinnakerusers@googlegroups.com
name: SpiNNaker Software Team
post-code: M13 9PL
license: Apache-2.0
repository: https://github.com/SpiNNakerManchester/SpiNNUtils
GitHub Events
Total
- Issues event: 3
- Delete event: 35
- Issue comment event: 5
- Push event: 209
- Pull request review event: 11
- Pull request event: 65
- Create event: 44
Last Year
- Issues event: 3
- Delete event: 35
- Issue comment event: 5
- Push event: 209
- Pull request review event: 11
- Pull request event: 65
- Create event: 44
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 9
- Total pull requests: 161
- Average time to close issues: 18 days
- Average time to close pull requests: 23 days
- Total issue authors: 4
- Total pull request authors: 5
- Average comments per issue: 2.89
- Average comments per pull request: 0.78
- Merged pull requests: 125
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 2
- Pull requests: 68
- Average time to close issues: about 17 hours
- Average time to close pull requests: 4 days
- Issue authors: 1
- Pull request authors: 2
- Average comments per issue: 1.5
- Average comments per pull request: 0.06
- Merged pull requests: 43
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Christian-B (8)
- dkfellows (4)
- mpuzovic (1)
- Andrewwango (1)
Pull Request Authors
- Christian-B (136)
- dkfellows (22)
- rowleya (17)
- alan-stokes (7)
- andrewgait (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 191 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 13
- Total maintainers: 5
pypi.org: spinnutilities
Utility classes and functions for SpiNNaker projects
- Homepage: https://github.com/SpiNNakerManchester/SpiNNUtils
- Documentation: https://spinnutilities.readthedocs.io/
- License: Apache-2.0
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Latest release: 1!7.3.0
published over 1 year ago
Rankings
Maintainers (5)
Dependencies
- appdirs *
- numpy *
- pyyaml *
- requests *
- c_module * test
- nonexiststent_c * test
- nonexistent * test
- package_2 * test
- package_3 * test
- package_4 * test
- package_5 * test
- pyyaml * test
- ./support/actions/check-copyrights * composite
- ./support/actions/pylint * composite
- ./support/actions/pytest * composite
- ./support/actions/python-tools * composite
- ./support/actions/run-setup * composite
- ./support/actions/sphinx * composite
- actions/checkout v3 composite
- actions/setup-python v4 composite