webatlas-app
An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (11.2%) to scientific vocabulary
Repository
An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.
Basic Info
Statistics
- Stars: 14
- Watchers: 6
- Forks: 3
- Open Issues: 3
- Releases: 2
Metadata Files
README.md
WebAtlas App
This React app builds on the Vitessce framework to create a web portal for spatial and single-cell experiment data. The app is designed to visualise data produced by the webatlas-pipeline.
Available Scripts
In the project directory, you can run:
npm install
Triggers the installation of all modules that are listed as dependencies for this app. Should be run before starting the application.
npm start
Runs the app in the development mode.\ Open http://localhost:3000 to view it in your browser.
The page will reload when you make changes.
npm test
Launches the test runner in the interactive watch mode.
npm run build
Builds the app for production to the build folder.
Deployment
This app is automatically deployed.
Owner
- Name: Haniffa Lab
- Login: haniffalab
- Kind: organization
- Location: Newcastle upon Tyne
- Website: https://haniffalab.com/
- Twitter: haniffalab
- Repositories: 26
- Profile: https://github.com/haniffalab
Based in the Newcastle University Biosciences Institute, we apply disruptive techniques to understand how the immune system develops and maintains health
Citation (CITATION.cff)
cff-version: 1.2.0
type: software
message: "If you use this repo, please cite it"
title: "WebAtlas"
url: "https://github.com/haniffalab/webatlas-pipeline"
doi: 10.5281/zenodo.7405818
authors:
- family-names: "Li"
given-names: "Tong"
orcid: "https://orcid.org/0000-0002-8240-4476"
- family-names: "Horsfall"
given-names: "David"
orcid: "https://orcid.org/0000-0002-8086-812X"
- family-names: "Basurto-Lozada"
given-names: "Daniela"
orcid: "https://orcid.org/0000-0003-3943-8424"
- family-names: "Prete"
given-names: "Martin"
orcid: "https://orcid.org/0000-0002-5946-821X"
- family-names: "Jessica"
given-names: "Cox"
orcid: "https://orcid.org/0000-0002-1109-1679"
- family-names: "Iolo"
given-names: "Squires"
orcid: "https://orcid.org/0000-0002-3424-6354"
GitHub Events
Total
- Watch event: 2
- Fork event: 1
Last Year
- Watch event: 2
- Fork event: 1
Dependencies
- actions/checkout v2 composite
- actions/setup-node v2 composite
- actions/checkout v2 composite
- actions/setup-node v2 composite
- codecov/codecov-action v1 composite
- 1986 dependencies
- cross-env ^7.0.3 development
- jest-canvas-mock ^2.4.0 development
- @sentry/react ^7.9.0
- @sentry/tracing ^7.9.0
- @testing-library/jest-dom ^5.16.5
- @testing-library/react ^12.1.5
- @testing-library/user-event ^13.5.0
- bootstrap ^5.2.0
- react ^16.14.0
- react-bootstrap ^2.5.0
- react-dom ^16.14.0
- react-scripts 5.0.0
- sass ^1.55.0
- vitessce ^1.2.2
- web-vitals ^2.1.4