https://github.com/giorginolab/sequencetable
Uniprot-to-sequence-table
Science Score: 13.0%
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○CITATION.cff file
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✓codemeta.json file
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○Scientific vocabulary similarity
Low similarity (6.2%) to scientific vocabulary
Repository
Uniprot-to-sequence-table
Basic Info
- Host: GitHub
- Owner: giorginolab
- License: agpl-3.0
- Language: Python
- Default Branch: main
- Size: 50.8 KB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 0
Metadata Files
README.md
title: Protein Sequence Table colorFrom: pink colorTo: gray sdk: gradio app_file: app.py
pinned: false
Protein Sequence Table
A Gradio-based web application that reformats protein sequences based on UniProt IDs and displays detailed annotations in a structured format.
Features
The application retrieves protein data from UniProt and presents the following information for each residue: - Position number in the sequence - Amino acid (single-letter code) - Secondary structure annotation - Associated Pfam domain - Disorder prediction - Participation in disulfide bridges - Post-translational modifications: * Glycosylation sites * Phosphorylation sites - Functional annotations: * Active sites * Metal binding sites * DNA binding regions * RNA binding regions * Ligand binding sites * Other modifications
Usage
- Launch the application
- Enter a valid UniProt ID (e.g., P53_HUMAN) in the input field
- Click "Submit" to generate the analysis
- Results will be displayed in a interactive data frame format
Requirements
- Python 3.7+
- Gradio
- Pandas
- Requests
- XML parsing libraries
Note
The application processes UniProt's XML format to extract annotations.
Owner
- Name: Giorgino Laboratory
- Login: giorginolab
- Kind: organization
- Location: Milan, Italy
- Website: www.giorginolab.it
- Repositories: 63
- Profile: https://github.com/giorginolab
Computational Biophysics
GitHub Events
Total
- Push event: 5
Last Year
- Push event: 5