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data-integration

https://github.com/popbr/data-integration

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
  • ○
    Academic publication links
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: popbr
  • License: apache-2.0
  • Language: Java
  • Default Branch: main
  • Size: 58.5 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 6
  • Open Issues: 6
  • Releases: 0
Created almost 4 years ago · Last pushed about 2 years ago
Metadata Files
Readme License Citation

README.md

Data Integration for the Study of Outstanding Productivity in Biomedical Research

This repository serves to share two programs:

  • Installation_Test helps in assessing whenever your set-up is correctly configured to run our main program,
  • Project/Database-IO is our main program, whose purpose is to process a variety of data sources (xml, cvs, json, …), insert relevant attributes into an SQL database, and then output the resulting data into an xml file.

A repo for the Honors Thesis/Prospectus Project

This project is authored by Dr. Clément Aubert and Noah Sleeper for the use in Mr. Sleeper's Honors Thesis at Augusta University. It is intended to work with Dr. Andrew Balas's research at Augusta University in looking at ways to generate qualitative measures of academic researchers/instutions/entities.

This project may be downloaded for the purposes of academic research or inquery, but please note that this project is only a tool for the collection and examination of databases and the data within said databases. This project and its authors do not claim ownership over any files downloaded or any data handled by the project, nor do they claim 100% accuracy in conclusions drawn from any results user may recieve.

This project relies on the use of different technologies to function. All use of these programs/entities falls under fair use.

Data Integration for the Study of Outstanding Productivity in Biomedical Research

The purpose, motivation and challenges behind this project are presented in

C. Aubert, A. Balas, T. Townsend, N. Sleeper, C.J. Tran, Data integration for the study of outstanding productivity in biomedical research, in: Proceedings of the 15th International Conference on Current Research Information Systems (Cris2022), Procedia Computer Science, Volume 211, 2022, pp. 196-200. http://hdl.handle.net/11366/1987, https://doi.org/10.1016/j.procs.2022.10.191.

Technologies

  • Microsoft Excel,
  • Maven,
  • Apache IO,
  • MySQL Server 8.0
  • mySQL Workbench 8.0

For a full list of dependencies, please have a look at the POM.xml file.

Owner

  • Name: Practices of outstanding productivity in biomedical research
  • Login: popbr
  • Kind: organization

Citation (CITATION.cff) 

cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Sleeper"
  given-names: "Noah"
- family-names: "Aubert"
  given-names: "Clément"
  orcid: "https://orcid.org/0000-0001-6346-3043"
title: "Data Integration for the Study of Outstanding Productivity in Biomedical Research"
version: 1.0.0
date-released: 2022-04-18
url: "https://github.com/popbr/data-integration"

GitHub Events

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  • Issues event: 1
  • Issue comment event: 1
Last Year
  • Issues event: 1
  • Issue comment event: 1

Issues and Pull Requests

Last synced: 6 months ago

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  • Total pull requests: 0
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  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 2.0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
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  • Average comments per issue: 0
  • Average comments per pull request: 0
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  • Bot pull requests: 0
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  • aubertc (1)
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Dependencies

Installation_Test/pom.xml maven
  • mysql:mysql-connector-java 8.0.23
  • org.apache.poi:poi 5.0.0
  • org.apache.poi:poi-ooxml 5.0.0
  • junit:junit 4.13.1 test
Project/Database-IO/pom.xml maven
  • mysql:mysql-connector-java 8.0.23
  • org.apache.poi:poi 5.0.0
  • org.apache.poi:poi-ooxml 5.0.0
  • junit:junit 4.13.1 test
.github/workflows/Installation_Test.yml actions
  • actions/checkout v3 composite
  • actions/setup-java v3 composite
  • actions/upload-artifact v3 composite
fileUtilsTest/pom.xml maven
  • commons-io:commons-io 2.11.0
  • junit:junit 4.13.1 test
Abstract_finder/pom.xml maven
  • mysql:mysql-connector-java 8.0.28
  • org.apache.poi:poi 5.0.0
  • org.apache.poi:poi-ooxml 5.0.0
  • org.jsoup:jsoup 1.16.1
  • xerces:xercesImpl 2.12.2
  • junit:junit 4.13.1 test