image-processing-matlab
Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria
Science Score: 67.0%
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (5.6%) to scientific vocabulary
Keywords
Repository
Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria
Basic Info
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 2
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Metadata Files
README.md
Image acquisition from live cell image instrument (IncuCyte®) and processed in MATLAB to acquire desired frames and export into a video format.
Reuired files
- Sequential images from the IncuCyte® should be in the local folder
Run the code
1. open the code file (mcode.m) in MATLAB
2. Run it in MATLAB console
3. The code will prompt to select the folder (where you saved the images)
4. DONE!
Movie 1 🎬
Video with MATLAB processing inset only
Movie 2 🎬
Video with insets of MATLAB processing and Growth Curves
Citation:
*Kalsum, S., Andersson, B., Das, J. et al. A high-throughput screening assay based on automated microscopy for monitoring antibiotic susceptibility of *Mycobacterium tuberculosis phenotypes. BMC Microbiol 21, 167 (2021). Find full article here
Owner
- Name: Jyotirmoy Das
- Login: JD2112
- Kind: user
- Location: Linköping, Sweden
- Company: Linköping University
- Website: https://liu.se/medarbetare/jyoda68
- Twitter: jyotirmoy21
- Repositories: 5
- Profile: https://github.com/JD2112
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Das
given-names: Jyotirmoy
orcid: https://orcid.org/0000-0002-5649-4658
title: "Image-Processing-MATLAB"
version: 0.1.1
identifiers:
- type: doi
value: 10.5281/zenodo.11104350
date-released: 2024-05-02