Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/google-research/connectomics

https://github.com/google-research/connectomics

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (5.9%) to scientific vocabulary

Keywords

connectomics

Keywords from Contributors

research reinforcement-learning transformers deep-neural-networks distributed cart decision-forest decision-trees distributed-computing gradient-boosting
Last synced: 6 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: google-research
  • License: apache-2.0
  • Language: Python
  • Default Branch: main
  • Homepage:
  • Size: 429 KB
Statistics
  • Stars: 44
  • Watchers: 8
  • Forks: 13
  • Open Issues: 8
  • Releases: 1
Topics
connectomics
Created about 4 years ago · Last pushed 7 months ago
Metadata Files
Readme Contributing License

README.md

Connectomics

License

Note: Under heavy development

This repository is currently under significant development, and should not be considered stable. Semantic versioning is not guaranteed for now; APIs may - and likely will - change often and without notice.

About this repository

Common code for analyzing volumetric datasets for connectomic reconstruction, including geometric primitives like BoundingBox and BoxGenerator, and dealing with segmentation ID ranges, including relabeling, making ranges contiguous, and testing whether two volumes contain equivalent sequences.

Coming soon: pipeline primitives to process subvolumes.

Projects using Connectomics

  1. SOFIMA - SOFIMA (Scalable Optical Flow-based Image Montaging and Alignment) is a tool for stitching, aligning and warping large 2d, 3d and 4d microscopy datasets.

This is not an officially supported Google product.

Owner

  • Name: Google Research
  • Login: google-research
  • Kind: organization
  • Location: Earth

GitHub Events

Total
  • Watch event: 9
  • Delete event: 33
  • Issue comment event: 3
  • Member event: 1
  • Push event: 83
  • Pull request event: 68
  • Fork event: 4
  • Create event: 35
Last Year
  • Watch event: 9
  • Delete event: 33
  • Issue comment event: 3
  • Member event: 1
  • Push event: 83
  • Pull request event: 68
  • Fork event: 4
  • Create event: 35

Committers

Last synced: 7 months ago

All Time
  • Total Commits: 177
  • Total Committers: 12
  • Avg Commits per committer: 14.75
  • Development Distribution Score (DDS): 0.599
Past Year
  • Commits: 42
  • Committers: 8
  • Avg Commits per committer: 5.25
  • Development Distribution Score (DDS): 0.643
Top Committers
Name Email Commits
Tim Blakely b****y@g****m 71
Jan-Matthis Lueckmann j****s@g****m 30
Michal Januszewski m****z@g****m 29
Peter H. Li p****i@g****m 20
Connectomics Team n****y@g****m 7
Alex Immer a****r@g****m 5
Jin Xu j****x@g****m 4
Tim Blakely t****y@g****m 4
Peter Hawkins p****s@g****m 3
Rebecca Chen r****n@g****m 2
Emmanuel Ferdman e****n@g****m 1
Laramie Leavitt l****r@g****m 1
Committer Domains (Top 20 + Academic)
google.com: 10

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 4
  • Total pull requests: 239
  • Average time to close issues: 7 days
  • Average time to close pull requests: about 8 hours
  • Total issue authors: 3
  • Total pull request authors: 5
  • Average comments per issue: 2.25
  • Average comments per pull request: 0.03
  • Merged pull requests: 137
  • Bot issues: 1
  • Bot pull requests: 234
Past Year
  • Issues: 2
  • Pull requests: 68
  • Average time to close issues: 6 days
  • Average time to close pull requests: about 9 hours
  • Issue authors: 2
  • Pull request authors: 4
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.03
  • Merged pull requests: 35
  • Bot issues: 1
  • Bot pull requests: 64
View more stats
Top Authors
Issue Authors
  • liuyx599 (2)
  • mrc-sala (1)
  • copybara-service[bot] (1)
Pull Request Authors
  • copybara-service[bot] (232)
  • dependabot[bot] (2)
  • emmanuel-ferdman (2)
  • GameRoMan (2)
  • pan25-1 (1)
Top Labels
Issue Labels
Pull Request Labels
dependencies (2) python (2)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 73,643 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 1
  • Total versions: 6
  • Total maintainers: 1
pypi.org: connectomics

Common repository for connectomics-related libraries.

  • Versions: 6
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 73,643 Last month
Rankings
Dependent packages count: 10.1%
Forks count: 12.6%
Stargazers count: 14.0%
Average: 15.8%
Downloads: 20.6%
Dependent repos count: 21.6%
Maintainers (1)
timblakely
Last synced: 7 months ago

Dependencies

pyproject.toml pypi