kvfinder-web-portal - KVFinder-web portal v1.1.1

The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.

We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).

What's Changed

• Bump rocker/shiny from 4.2.3 to 4.3.0 by @dependabot in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/42
• Update KVFinder-web to v1.1.1 by @jvsguerra, @helder-ribeiro and @zgcarvalho in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/46 and https://github.com/LBC-LNBio/KVFinder-web-portal/pull/45

Full Changelog: https://github.com/LBC-LNBio/KVFinder-web-portal/compare/v1.1.0...v1.1.1

- R
Published by jvsguerra over 2 years ago

kvfinder-web-portal - KVFinder-web portal v1.1.1

The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.

We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).

What's Changed

• Bump rocker/shiny from 4.2.3 to 4.3.0 by @dependabot in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/42
• Update KVFinder-web to v1.1.1 by @jvsguerra, @helder-ribeiro and @zgcarvalho in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/46 and https://github.com/LBC-LNBio/KVFinder-web-portal/pull/45

Full Changelog: https://github.com/LBC-LNBio/KVFinder-web-portal/compare/v1.1.0...v1.1.1

- R
Published by jvsguerra over 2 years ago

kvfinder-web-portal - KVFinder-web portal v1.1.0

The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.

We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).

What's Changed

• Bump rocker/shiny from 4.2.2 to 4.2.3 by @dependabot in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/30
• Update KVFinder-web UI by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/33
• change ggplot hyd scale to png by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/34
• Update hydropathy and depth scales by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/35
• task list changes by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/37
• Update website banner by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/36
• Update interface residue visualization by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/38
• Update KVFinder-web portal to version 1.1.0 by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/39
• Update Tutorial page by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/40
• fix bug when cavreplist is NULL by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/41

Full Changelog: https://github.com/LBC-LNBio/KVFinder-web-portal/compare/v1.0.0...v1.1.0

- R
Published by jvsguerra almost 3 years ago

kvfinder-web-portal - KVFinder-web portal v1.0.0

The KVFinder-web portal, developed in R Shiny, delivers the major functionalities of the KVFinder-web service, where users can load a target biomolecule, adjust detection parameters, select run modes, and download and visualize results. The web portal provides a simple and interactive way to analyze and visualize cavities. Volumes and areas are shown in an interactive table that can be downloaded in TOML format. A biomolecule viewer, powered by the NGL engine for R, displays the biomolecular structure with its cavities, which can be downloaded in PDB format, and allows various customizations, such as highlighting cavities and displaying interface residues surrounding them.

We provide a publicly available KVFinder-web service at https://kvfinder-web.cnpem.br/ with KVFinder-web portal as the graphical web interface. Besides our publicly available KVFinder-web service, a local web service can also be configured on third-party platforms, such as institutional servers or cloud services, using parKVFinder as a service (SaaS).

What's Changed

• Update Dockerfile by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/1
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/2
• fix bug lig upload by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/3
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/6
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/7
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/8
• create variable to store the url by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/9
• update docker file by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/10
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/11
• add shinyWidgets to dockerfile by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/12
• fix url bug by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/13
• fix bug upload pdb by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/16
• New tutorial page by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/15
• Bump rocker/shiny from 4.1.1 to 4.2.2 by @dependabot in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/17
• Dev2 by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/18
• small changes text by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/19
• fix warning by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/20
• Add funding and update documentation by @jvsguerra in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/22
• New changes by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/23
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/24
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/25
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/26
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/27
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/28
• Dev by @helder-ribeiro in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/29

New Contributors

• @jvsguerra made their first contribution in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/15
• @dependabot made their first contribution in https://github.com/LBC-LNBio/KVFinder-web-portal/pull/17

Full Changelog: https://github.com/LBC-LNBio/KVFinder-web-portal/commits/v1.0.0

- R
Published by jvsguerra almost 3 years ago